PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.8FU6T
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 182aa    MW: 20567.6 Da    PI: 11.0479
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.8FU6TgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.89.4e-1488180397
                  EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                  k l +s   +s+ +v+p +f e+   + ++   + +   +g  +++ l+++kk++   +lt+GWk F+k ng ++g ++ F++  ++e++l+vk++
  Araip.8FU6T  88 KLL-TSTQVQSSAVVIPLRFSESAFPSRHN--HVNVILDNGSCYRMGLRWSKKRKVqLYLTRGWKTFAKYNGFRAGTVLEFSVLPSDETTLHVKIL 180
                  555.555555555********999644444..5666666699999999995555555*************************887799999**997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100176.80E-1183181No hitNo description
SuperFamilySSF1019362.75E-1385180IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.4E-1485181IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.46285182IPR003340B3 DNA binding domain
SMARTSM010192.1E-486182IPR003340B3 DNA binding domain
PfamPF023626.9E-1188180IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MFCLTQTTLA LSIQMVCLTK EMLLWRININ FLIRRCSIAK LLTIMFLLRA IQPLKPKKKN  60
AGNNIMSPLI SSDPGTAIQG AQPLTCLKLL TSTQVQSSAV VIPLRFSESA FPSRHNHVNV  120
ILDNGSCYRM GLRWSKKRKV QLYLTRGWKT FAKYNGFRAG TVLEFSVLPS DETTLHVKIL  180
KI
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.8FU6T
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020989996.12e-79uncharacterized protein LOC110277091
TrEMBLA0A445BVX36e-56A0A445BVX3_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2396823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24650.18e-07DNA binding;DNA binding;sequence-specific DNA binding transcription factors