PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.8GA1V
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 168aa    MW: 19205.5 Da    PI: 8.9774
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.8GA1VgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.5e-055779123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y+C+ C+++F++   L  H+++H
  Araip.8GA1V 57 YTCNFCHRHFTSAQALGGHMNVH 79
                 9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.29E-75483No hitNo description
Gene3DG3DSA:3.30.160.604.1E-45581IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00955779IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.2195784IPR007087Zinc finger, C2H2
PROSITE patternPS0002805979IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MEEEYDNKWL MWMKRKQVFV GKKSSSSSYS YLSWEERAFA EDAARVLGGS TWPPRSYTCN  60
FCHRHFTSAQ ALGGHMNVHR RDRARLKQSS SSSLGEDNQQ HAITGSYSSS IKRGQQKNFE  120
EPEDTVISSC KKLKTTTTIF CLKPCLNDNG IEDLDLELRL GAKQQKVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-115279229superman protein
2l1o_A2e-115279229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.8GA1V
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016165742.11e-115probable transcriptional regulator RABBIT EARS
RefseqXP_025668030.11e-115probable transcriptional regulator RABBIT EARS
TrEMBLA0A444YCW61e-114A0A444YCW6_ARAHY; Uncharacterized protein
STRINGGLYMA11G34285.14e-35(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17763078
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.17e-26zinc-finger protein 10