PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.8GU9K

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

LBD

Protein Properties

Length: 162aa MW: 17725 Da PI: 7.8936

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.8GU9K	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	145.3	1.8e-45	13	112	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrr+Ca dCv+apyfpa++p+kfanvhk+FGasnv k+l++lpe++r da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+ +la+++ Araip.8GU9K 13 PCAACKLLRRRCAVDCVFAPYFPADEPHKFANVHKVFGASNVNKMLQELPEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDALQIQLAVAQ 110 7**********************************************************************************************999 PP DUF260 99 ee 100 +e Araip.8GU9K 111 AE 112 76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.464	12	113	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.9E-45	13	110	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence Send to blast
MKEGGRKQGS ASPCAACKLL RRRCAVDCVF APYFPADEPH KFANVHKVFG ASNVNKMLQE 60 LPEHQRGDAV SSMVYEANAR VRDPVYGCVG AISSLQQQID ALQIQLAVAQ AEAVHLRVRQ 120 TASSSYWTQP QSPTNSASPP SKPIFDIDMG LDHTSYADSM WS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-49	9	112	7	110	LOB family transfactor Ramosa2.1
5ly0_B	1e-49	9	112	7	110	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.8GU9K

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016198058.1	1e-119	LOB domain-containing protein 4
Refseq	XP_025646910.1	1e-119	LOB domain-containing protein 4
Swissprot	Q9SHE9	1e-69	LBD4_ARATH; LOB domain-containing protein 4
TrEMBL	A0A444ZHX3	1e-118	A0A444ZHX3_ARAHY; Uncharacterized protein
STRING	GLYMA07G35000.1	8e-94	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1334	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	3e-64	LOB domain-containing protein 4