PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.8I293
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 223aa    MW: 25831.9 Da    PI: 10.0622
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.8I293genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.8e-054261120
                 EEETTTTEEESSHHHHHHHH CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHi 20
                 ++C  Cg+ F +++ L++H 
  Araip.8I293 42 HVCRVCGRKFYTNEKLVNHF 61
                 79*****************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10101.5E-61892IPR029060PIN domain-like
PROSITE profilePS501579.6814270IPR007087Zinc finger, C2H2
CDDcd061671.02E-10108195No hitNo description
PfamPF019361.6E-6114195IPR021139NYN domain, limkain-b1-type
Gene3DG3DSA:3.40.50.10101.5E-6127202IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MVAYANSHTF TSVPHAVRQR RKEKELYNRL GSKGIIKRND PHVCRVCGRK FYTNEKLVNH  60
FKQLYESEQM KRVNHIASAR GNRRVKLVAK YSMKMEKYKK AARDILTPRV GYGLADELKR  120
AGFWVQSVLD KPQAADHALE SHMVDMMDHR WVECIVLVSD DYDFANVIRE AKLRCLKTIV  180
IGDTSDGVLK RIADTSFSWE EILMGNARKE AISVVENWKD VIF
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.8I293
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020971347.11e-150uncharacterized protein LOC107625141
RefseqXP_025632659.11e-150uncharacterized protein LOC112727205
TrEMBLA0A445EDY61e-150A0A445EDY6_ARAHY; Uncharacterized protein
STRINGAES719771e-125(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75002533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.11e-103C2H2 family protein