PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.8JT0Y
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 449aa    MW: 52178.1 Da    PI: 7.7745
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.8JT0YgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR156.68.7e-1848132189
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 
                  kfY++YAk +GFs+r+++++k++++   +++  +Cs+egkr+++ +    +++t+++   +C  ++ ++  k  g w ++k++l+H+H++
  Araip.8JT0Y  48 KFYKDYAKAAGFSTRVRSTNKKRNE--SKNQLITCSREGKRKSKISP---TEKTNPTAGLNCPTRIYIHTLKdVGAWIISKVVLHHSHPC 132
                  6****************99998544..589999*********99877...8999**************998879**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.5E-1548133IPR004330FAR1 DNA binding domain
PROSITE profilePS509668.877297333IPR007527Zinc finger, SWIM-type
SMARTSM005756.3E-4308335IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MDDSTSDCQL NQGEVDFEFE SNEPLSVVDE QLVPKVGMTF KTLEDADKFY KDYAKAAGFS  60
TRVRSTNKKR NESKNQLITC SREGKRKSKI SPTEKTNPTA GLNCPTRIYI HTLKDVGAWI  120
ISKVVLHHSH PCYPTQAEML KQHRELSMSV HRTIENNEEV DLYEDRHIWV PIYLDHHFWA  180
GMKSTQSSEI MHSFFNKFIT RNSSLIQFVK QYDNCLESRE QAERESDAVD FHTVIPCATK  240
SSIEAQFQDV YTHQKFREVQ AQFRRKVNCI TRLTNFALGY SIYEVGEQVS SSIFNKFVVT  300
YDSVAAEVKC QCLLFESRGI LCHHALSVLS FERVSQVSSR YILERWSKKI KRRHTHIKSS  360
HDEPLLEPRS KRFDELIFRS QNICEFASES EEPTAILHRA YDNIMVEMES LKAKRRGHLL  420
YLTKTPTWNP LMSFKALQGF EQEDVQKIG
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.8JT0Y
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020997233.11e-164protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A444Z1620.0A0A444Z162_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.21e-33far-red elongated hypocotyls 3