PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.8L1R3
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MIKC_MADS
Protein Properties Length: 163aa    MW: 18916.1 Da    PI: 10.5034
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.8L1R3genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF74.96.2e-241048240
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
                  i+n +nrqvt+skRrngi+KKA+ELSvLCda+v++ii 
  Araip.8L1R3 10 LIQNPTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIIT 48
                 699**********************************95 PP
2K-box44.28.1e-1662125767
        K-box   7 ksleeakaeslqqelakLkkeienLqreqRhllGe...dLesLslkeLqqLeqqLekslkkiRs 67 
                   +l+++++e++ ++l+kLk+ +++L+r++R+++Ge   d++++s ++L+ Le+++ +++ kiR 
  Araip.8L1R3  62 IDLWHSHYEKMLENLKKLKDTNNKLRRQIRNRIGEgslDMDDMSSQQLRTLEEDMVSAIAKIRH 125
                  459********************************77779***********************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.6E-28157IPR002100Transcription factor, MADS-box
PROSITE profilePS5006626.142147IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.1E-26280IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-20323IPR002100Transcription factor, MADS-box
PfamPF003191.2E-191148IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-202338IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-203859IPR002100Transcription factor, MADS-box
PfamPF014869.0E-1066125IPR002487Transcription factor, K-box
PROSITE profilePS512977.66369163IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MGRGKIEIKL IQNPTNRQVT YSKRRNGIFK KAHELSVLCD AKVSLIITKK FIDQYRKTLG  60
DIDLWHSHYE KMLENLKKLK DTNNKLRRQI RNRIGEGSLD MDDMSSQQLR TLEEDMVSAI  120
AKIRHCQPPS RRHSFHPHLL CARREALSAA ATLLLITVYM CSS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.8L1R3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020961209.11e-106floral homeotic protein DEFICIENS
RefseqXP_029146158.11e-106floral homeotic protein DEFICIENS
SwissprotQ003J23e-50TM6_VITVI; Agamous-like MADS-box protein TM6
TrEMBLA0A445AWC01e-104A0A445AWC0_ARAHY; Uncharacterized protein
STRINGGLYMA01G37470.11e-70(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27353375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.15e-34MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]