PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.8L65U

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

bZIP

Protein Properties

Length: 384aa MW: 43087.7 Da PI: 7.0357

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.8L65U	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	22.6	2.3e-07	250	296	17	63
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 17 ArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 A+rsR RK+++i+eLe+ v++L+ae + ele l+++ l +e+ Araip.8L65U 250 AQRSRVRKLQYIAELERNVQALQAEGCEISAELEFLNQQNLILSMEN 296 89***********************************9998887776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	0.0034	239	298	IPR004827	Basic-leucine zipper domain
CDD	cd14703	6.01E-16	241	289	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.5E-4	250	293	No hit	No description
SuperFamily	SSF57959	1.44E-5	250	292	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence Send to blast
KVLVLLLMAN SKGSSNYRNL MYPGKHALLP PKIPFPSASQ AYADYIPNPA IGSGQKPREG 60 NIQHHRTSSE SLVIEEQPSW LDDLLNEPET PVRRGVHRRS SSDSFAYVDT HNMSNITYGD 120 QDEYKYKNLL SFPSWSSQDF DHNKDAHHIL MHAEMNSAKQ NIRSWDSFSN ITNHPAGVLS 180 GKDSVAFQGS GSLCPPPHEA EGLPSTANEN HDAAESGIQD SKSSFEKKDG SHAKSSASET 240 DTKRAKQQFA QRSRVRKLQY IAELERNVQA LQAEGCEISA ELEFLNQQNL ILSMENKALK 300 HRLESTAQEQ LIKYLEQEVL EREIGRLRAL YQQQQQLSHQ PQQQPSASHR RTNSRDLESQ 360 FTNLSLKHKD SGSGHDPATG ALRI

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence Send to blast

KVLVLLLMAN SKGSSNYRNL MYPGKHALLP PKIPFPSASQ AYADYIPNPA IGSGQKPREG  60
NIQHHRTSSE SLVIEEQPSW LDDLLNEPET PVRRGVHRRS SSDSFAYVDT HNMSNITYGD  120
QDEYKYKNLL SFPSWSSQDF DHNKDAHHIL MHAEMNSAKQ NIRSWDSFSN ITNHPAGVLS  180
GKDSVAFQGS GSLCPPPHEA EGLPSTANEN HDAAESGIQD SKSSFEKKDG SHAKSSASET  240
DTKRAKQQFA QRSRVRKLQY IAELERNVQA LQAEGCEISA ELEFLNQQNL ILSMENKALK  300
HRLESTAQEQ LIKYLEQEVL EREIGRLRAL YQQQQQLSHQ PQQQPSASHR RTNSRDLESQ  360
FTNLSLKHKD SGSGHDPATG ALRI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.8L65U

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016190754.1	0.0	uncharacterized protein At4g06598
Refseq	XP_016190755.1	0.0	uncharacterized protein At4g06598
Refseq	XP_020975461.1	0.0	uncharacterized protein At4g06598
Refseq	XP_025639330.1	0.0	uncharacterized protein At4g06598
Refseq	XP_025639331.1	0.0	uncharacterized protein At4g06598
Swissprot	Q8W3M7	4e-66	Y4598_ARATH; Uncharacterized protein At4g06598
TrEMBL	A0A445DN86	0.0	A0A445DN86_ARAHY; Uncharacterized protein
STRING	GLYMA05G30170.3	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5123	26	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58110.2	1e-105	bZIP family protein

Publications ? help Back to Top
Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4. DNA Res., 2001. 8(6): p. 285-90 [PMID:11853315]