PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.8WS8L
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 535aa    MW: 61463.1 Da    PI: 8.9341
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.8WS8LgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR177.72.3e-2491180290
         FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                  fYn+Y++   F  r+ k+ ++ + gei+++tfvC+++g+re++  +  +++r+++++tr+gC a++++k+++ +g+w+v+++++eHnHela
  Araip.8WS8L  91 FYNNYSRLKRFASRRGKTVRN-TAGEIVWYTFVCNRQGFREKKWLEkVDRKREHKVVTRCGCMAEMRIKRKEgSGRWYVSRFVEEHNHELA 180
                  9****************9998.8888***************997664678888999*********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.2E-2191180IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.78309342IPR007527Zinc finger, SWIM-type
SMARTSM005750.0036317344IPR006564Zinc finger, PMZ-type
PfamPF044347.5E-4318340IPR007527Zinc finger, SWIM-type
SuperFamilySSF577566.7E-7446485IPR001878Zinc finger, CCHC-type
Gene3DG3DSA:4.10.60.102.2E-4462482IPR001878Zinc finger, CCHC-type
PROSITE profilePS501589.076465482IPR001878Zinc finger, CCHC-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MANVIMASSS KFCKDACMWN EPLADNWMEG KGGVSNSQDT MYDTRVEEDA ELSDWEGRGA  60
SMLPVFLGLD GLQAEDVLEM EFSSPQEASG FYNNYSRLKR FASRRGKTVR NTAGEIVWYT  120
FVCNRQGFRE KKWLEKVDRK REHKVVTRCG CMAEMRIKRK EGSGRWYVSR FVEEHNHELA  180
YGKLVDYLRS HRKISEVEVA QLTSMREIGI SIPKIYESFA AQLGGFNLVT FTKQDMCVDF  240
LRDTEDELDF RSWYGTPVLQ TEFVELEKSG WTVFTREMFV RFRDSLKREN PHTYTLQKYR  300
RPEMNWKVYR DHISNRFSCS CMRMESFGIP CVHILSVCVM LDLVEIPESL VLRRWSKAAK  360
LEIHNQCVEQ QTADPSVTYR TRLGAFSQLC KRLGRVACMS DEDFKLYSKK LLSDALFLEI  420
KYGLRPSTDD ITTANDCGVK DPIRVRTKGT GRMSQAGGSA PKTKRKCSTC GKLGHRRTRC  480
PNGAAQASTR INESHGGRNK RKRSKVPVVV RDNCQPENAC QAGSDKWEHF SLADP
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.8WS8L
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016169062.10.0protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_025670666.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A444ZXD50.0A0A444ZXD5_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11042217
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-21FAR1-related sequence 5