PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.8X6BU
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family ARF
Protein Properties Length: 223aa    MW: 25325.3 Da    PI: 8.2631
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.8X6BUgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.26e-13821521684
                  EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
           B3  16 lvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                  + +  + +++      +++ +  ++l+ +d++ ++W++++iyr++++r++ t+ W+ Fv+ ++L +gD+v+F +
  Araip.8X6BU  82 IDIDPELLKKVkdysmQLP-A--QELVARDLHDNVWTFRHIYRGQPKRHLVTTEWSIFVSGKRLFAGDSVLFIR 152
                  6666666666666653333.3..48***********************************************74 PP
2Auxin_resp35.73.6e-13179212134
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekveka 34 
                  aaha++++s+F+v+YnPr s+seFv++++k+ k 
  Araip.8X6BU 179 AAHAFANNSPFTVFYNPRDSPSEFVIPLAKYYKV 212
                  79*****************************886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.3210.102.0E-16673IPR006674HD domain
PfamPF019665.2E-6981IPR006674HD domain
SuperFamilySSF1096049.87E-121996No hitNo description
CDDcd000777.27E-52088No hitNo description
SMARTSM010190.008272165IPR003340B3 DNA binding domain
PfamPF023621.7E-1087154IPR003340B3 DNA binding domain
SuperFamilySSF1019363.77E-1988182IPR015300DNA-binding pseudobarrel domain
CDDcd100175.04E-892150No hitNo description
Gene3DG3DSA:2.40.330.103.1E-1794158IPR015300DNA-binding pseudobarrel domain
PfamPF065073.9E-9179211IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MITVQAIAYC TAQSVLEGPE LGIEHCDVMA GKLAGLLHDV GHGPFSHMFK GKFLFRVFNG  60
DKWSHEKMSA KMINYMVDEH NIDIDPELLK KVKDYSMQLP AQELVARDLH DNVWTFRHIY  120
RGQPKRHLVT TEWSIFVSGK RLFAGDSVLF IRLANRQLAN ISSSVLSSDS MHIGILAAAA  180
HAFANNSPFT VFYNPRDSPS EFVIPLAKYY KVVFLFSFLE FVR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A3e-5094213188318Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.8X6BU
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022929594.12e-58auxin response factor 19-like
RefseqXP_023546642.13e-58auxin response factor 19-like
SwissprotQ0D9R79e-53ARFS_ORYSJ; Auxin response factor 19
TrEMBLA0A444YRL61e-118A0A444YRL6_ARAHY; Uncharacterized protein
STRINGXP_007152995.16e-55(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.14e-50auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang S, et al.
    The auxin response factor, OsARF19, controls rice leaf angles through positively regulating OsGH3-5 and OsBRI1.
    Plant Cell Environ., 2015. 38(4): p. 638-54
    [PMID:24995795]