PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.8XF7G

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 401aa MW: 46761.6 Da PI: 9.4027

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.8XF7G	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	46.3	1.4e-14	27	112	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 kfY+ Y k +GFs++++++++ ++i+++ vCs+eg+ +++ + + +t+++ +C ++ v+ +k + w ++k+ l+H+H+++ Araip.8XF7G 27 KFYKYYFKLAGFSTKIRNTTRD--RDKIKNQLIVCSREGRWKSKISP---TLKTNPSAGLNCPVRIYVHIMKdVSLWTISKVALNHSHPCC 112 6**************98887..5669********9998777...999**************9899***********987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.6E-11	27	112	IPR004330	FAR1 DNA binding domain
SMART	SM00575	0.0041	252	279	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence Send to blast
MQTSCVVDEK FVPKVGMIFK TLEEAGKFYK YYFKLAGFST KIRNTTRDRD KIKNQLIVCS 60 REGRWKSKIS PTLKTNPSAG LNCPVRIYVH IMKDVSLWTI SKVALNHSHP CCADQAEMLK 120 QHRELSIMHC FRFTRPYSFG LFITRNSSLS QFVKQYDNCL ASREQAEREF NAADFHTVIP 180 CTTKSAIEAQ FQRVYTHEKF REVQAQFRGK VNCITRSMHS TLGFTTYKVI EQVFNSTFNK 240 FVVTYDVVSR DVKCDCLLFE SRGILYRHSL SVLSFERVDN LALKYILERW SKNIKKMHTH 300 IKSSQDEPLL EPRSKRFDEL VFRSHNICEF ASVSEELIGI LHRAFDKTWI KPGKKDLKCH 360 EEKEKDSSNR DSGSSIQSSS TLYNIPDMNY PREDCTSFSF Y

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence Send to blast

MQTSCVVDEK FVPKVGMIFK TLEEAGKFYK YYFKLAGFST KIRNTTRDRD KIKNQLIVCS  60
REGRWKSKIS PTLKTNPSAG LNCPVRIYVH IMKDVSLWTI SKVALNHSHP CCADQAEMLK  120
QHRELSIMHC FRFTRPYSFG LFITRNSSLS QFVKQYDNCL ASREQAEREF NAADFHTVIP  180
CTTKSAIEAQ FQRVYTHEKF REVQAQFRGK VNCITRSMHS TLGFTTYKVI EQVFNSTFNK  240
FVVTYDVVSR DVKCDCLLFE SRGILYRHSL SVLSFERVDN LALKYILERW SKNIKKMHTH  300
IKSSQDEPLL EPRSKRFDEL VFRSHNICEF ASVSEELIGI LHRAFDKTWI KPGKKDLKCH  360
EEKEKDSSNR DSGSSIQSSS TLYNIPDMNY PREDCTSFSF Y

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.8XF7G

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015960283.1	1e-145	protein FAR1-RELATED SEQUENCE 6-like
TrEMBL	A0A444XSH0	0.0	A0A444XSH0_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	5e-20	far-red elongated hypocotyls 3