PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.92BTQ

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

NAC

Protein Properties

Length: 213aa MW: 24271.4 Da PI: 5.1272

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.92BTQ	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	106.2	4e-33	19	138	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 lppGf F+Ptdeelv ++L +k++ +++ ++i+++d+ ++P++L+ k+ ++ +++yfFsk ++ +r+t++gyWk+ g+++++ls+ + Araip.92BTQ 19 LPPGFLFSPTDEELVLHFLYAKASLLPCHP-NIIPDLDLSLAHPSQLNDKALSSGNQYYFFSKVKE--------KRITENGYWKEIGESEAILSStVE 107 79***********************999.89**********9777778899999999755........699************98667 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 ++vg+kk Lvf+ g+ap+g +t+Wvm+ey++ Araip.92BTQ 108 KKVGTKKNLVFHIGEAPHGIETSWVMQEYHI 138 88*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.02E-40	15	170	IPR003441	NAC domain
PROSITE profile	PS51005	38.591	19	170	IPR003441	NAC domain
Pfam	PF02365	3.4E-20	20	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MMMMTTTSTT ADYESVKQLP PGFLFSPTDE ELVLHFLYAK ASLLPCHPNI IPDLDLSLAH 60 PSQLNDKALS SGNQYYFFSK VKEKRITENG YWKEIGESEA ILSSTVEKKV GTKKNLVFHI 120 GEAPHGIETS WVMQEYHICR SSNIISTSRA RRKHDHQIWS KWVLCKVYEK KGSVRGVNYC 180 SDDDDSGTEL SWLDEIYLSL DDDLEEISVS ILD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	7e-30	19	175	20	173	NAC domain-containing protein 19
3swm_B	7e-30	19	175	20	173	NAC domain-containing protein 19
3swm_C	7e-30	19	175	20	173	NAC domain-containing protein 19
3swm_D	7e-30	19	175	20	173	NAC domain-containing protein 19
3swp_A	7e-30	19	175	20	173	NAC domain-containing protein 19
3swp_B	7e-30	19	175	20	173	NAC domain-containing protein 19
3swp_C	7e-30	19	175	20	173	NAC domain-containing protein 19
3swp_D	7e-30	19	175	20	173	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.92BTQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016179197.1	1e-158	NAC domain-containing protein 104 isoform X1
Refseq	XP_025685978.1	1e-158	NAC domain-containing protein 104 isoform X1
Swissprot	Q8GWK6	7e-55	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	A0A444X5Q6	1e-157	A0A444X5Q6_ARAHY; Uncharacterized protein
STRING	GLYMA04G38990.1	1e-89	(Glycine max)
STRING	XP_007137797.1	2e-89	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1736	33	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	6e-57	xylem NAC domain 1

Publications ? help Back to Top
Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]