PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.93IAG

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 353aa MW: 40473.4 Da PI: 9.7035

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.93IAG	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	29.7	2.1e-09	50	123	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 fY++YAk + Fs+r+ + +Cs+egk +++ + +++t+++ +C a++ ++ k g w + k++l+H+H+++p Araip.93IAG 50 FYKDYAKAADFSTRN--------------QLITCSREGKWKSKISP---TEKTNPTAGLNCPARIYIHTLKgVGAWIILKVVLHHSHPCCP 123 666666666666554..............4578*****998877...8999***********9999**************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.6E-6	61	123	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.038	257	293	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	9.6E-5	265	290	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.4E-4	268	295	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
CSGVDQDFLG LSCCRSGVDQ EFLGPLCVVD DQFVPKVGMT FNTLEDAAKF YKDYAKAADF 60 STRNQLITCS REGKWKSKIS PTEKTNPTAG LNCPARIYIH TLKGVGAWII LKVVLHHSHP 120 CCPTQAEMLK QHRKLSMSIR RTIENNEEAG MKSTQRSESM HSFFNKFITR NSSLIQFFKQ 180 YDNCLGSREQ AERESNATDF YTVILCATKS SIEAQFQEVY IHQKGKANCI TRLTNSALGY 240 SVYEVGEQVS SSIFNKFVVT YNSVPAQVKC QCLLFESRGI LCRHALSVLS FERVTQVSPR 300 YILKRWSKKV KRRHTHIKSS HDEPLLEPRS KRFDELVFRF RKIFANLHHN RRS

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

CSGVDQDFLG LSCCRSGVDQ EFLGPLCVVD DQFVPKVGMT FNTLEDAAKF YKDYAKAADF  60
STRNQLITCS REGKWKSKIS PTEKTNPTAG LNCPARIYIH TLKGVGAWII LKVVLHHSHP  120
CCPTQAEMLK QHRKLSMSIR RTIENNEEAG MKSTQRSESM HSFFNKFITR NSSLIQFFKQ  180
YDNCLGSREQ AERESNATDF YTVILCATKS SIEAQFQEVY IHQKGKANCI TRLTNSALGY  240
SVYEVGEQVS SSIFNKFVVT YNSVPAQVKC QCLLFESRGI LCRHALSVLS FERVTQVSPR  300
YILKRWSKKV KRRHTHIKSS HDEPLLEPRS KRFDELVFRF RKIFANLHHN RRS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.93IAG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ637178	1e-146	HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020986710.1	1e-119	protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBL	A0A444YSY6	0.0	A0A444YSY6_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	5e-24	far-red elongated hypocotyls 3