PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.93X4C
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 367aa    MW: 42258.3 Da    PI: 8.2676
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.93X4CgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR146.61.1e-1486172191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  kfY++YAk +GFs+r++ ++++   +ei+++  +Cs+egk +++ +    +++t+++   +C  ++ ++  k  + w ++k++l+H+ +++p
  Araip.93X4C  86 KFYRNYAKATGFSTRVRITNRK--GNEIKNQLITCSREGKWKSKISP---TEKTNPKAGLNCPPRIYIHTLKdVDAWIISKVVLDHSYPCCP 172
                  6***************998777..8889*************998877...8999**************998879************998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.2E-1286172IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.174315351IPR007527Zinc finger, SWIM-type
PfamPF044348.6E-5317348IPR007527Zinc finger, SWIM-type
SMARTSM005752.4E-4326353IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MFFVIYISFS LCNSSFVFYL ICCFLKSKFE LVLKIMDDSS SDCQLNQGEV DYEFESNEVP  60
EPLSVVDDQF VPKVRMTFTT LEDAGKFYRN YAKATGFSTR VRITNRKGNE IKNQLITCSR  120
EGKWKSKISP TEKTNPKAGL NCPPRIYIHT LKDVDAWIIS KVVLDHSYPC CPSKAEMLKQ  180
HRELSMSIRC TIENNEEAGM RSTQRSESMH SFFNKFITRN SLLIQFVKQY DNCLGSREQA  240
ERESDAADFH TVIPCATKSS IEAQFQDVYT HQKFREVQAQ FRGKANCITR LTNSALGYSV  300
YEVGEQVSRS IFNMFVVTYD SVAAEVKCQC LLFESRGILC RHALSVLSFE RVSQVSPRYI  360
LERWSKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.93X4C
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A444ZKK90.0A0A444ZKK9_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.12e-24FAR1 family protein