PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.94EL9
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 246aa    MW: 28292.1 Da    PI: 7.0042
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.94EL9genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.44.3e-151563148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEd +l+   +++G + +W+  +r  g+ R++k+c++rw +yl
      Araip.94EL9 15 KGTWTPEEDTKLIAHLTRFGHPtNWRQLPRAAGLARCGKSCRLRWMNYL 63
                     799********************************************97 PP
2Myb_DNA-binding53.36.3e-1769112146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T+eEd+ +v++++q+G++ W+ Ia+++  gR+++++k+rw++
      Araip.94EL9  69 RGNYTQEEDDTIVKLHNQFGNR-WSMIASHLH-GRSDNEIKNRWHS 112
                      899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.7111063IPR017930Myb domain
SuperFamilySSF466897.26E-2812110IPR009057Homeodomain-like
SMARTSM007171.3E-91465IPR001005SANT/Myb domain
PfamPF002496.0E-121563IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-211670IPR009057Homeodomain-like
CDDcd001671.10E-71763No hitNo description
PROSITE profilePS5129423.44664118IPR017930Myb domain
SMARTSM007172.4E-1568116IPR001005SANT/Myb domain
PfamPF002491.4E-1469113IPR001005SANT/Myb domain
CDDcd001674.11E-1171111No hitNo description
Gene3DG3DSA:1.10.10.603.7E-2671117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MVRTPHRCEK SGVRKGTWTP EEDTKLIAHL TRFGHPTNWR QLPRAAGLAR CGKSCRLRWM  60
NYLRPDVKRG NYTQEEDDTI VKLHNQFGNR WSMIASHLHG RSDNEIKNRW HSQLKKRFQH  120
TSASNSNNHN ALIESTEEDI VNNNHNNNAT TNEYPYSNLH NTTSPASSQS DTYDNFSPLS  180
DFFYTPAVDL AAPFGNNSVL AIDNDDHYAN FLDNMVHSNI VPIGADYVWT QQDYSSPIYE  240
VQLWGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-25211811128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cold stress response (PubMed:14675437, PubMed:20807373, PubMed:22246661). Regulates positively the expression of genes involved in reactive oxygen species (ROS) scavenging such as peroxidase and superoxide dismutase during cold stress. Transactivates a complex gene network that have major effects on stress tolerance and panicle development (PubMed:20807373). {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|PubMed:22246661}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.94EL9
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold stress. {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016191823.20.0transcription factor MYB63-like
RefseqXP_025641076.10.0transcription factor MYB30-like
SwissprotQ7XBH41e-53MYB4_ORYSJ; Transcription factor MYB4
TrEMBLA0A445A5F60.0A0A445A5F6_ARAHY; Uncharacterized protein
STRINGGLYMA06G45570.21e-65(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79180.18e-53myb domain protein 63
Publications ? help Back to Top
  1. Park MR, et al.
    Supra-optimal expression of the cold-regulated OsMyb4 transcription factor in transgenic rice changes the complexity of transcriptional network with major effects on stress tolerance and panicle development.
    Plant Cell Environ., 2010. 33(12): p. 2209-30
    [PMID:20807373]
  2. Soltész A, et al.
    The rice Osmyb4 gene enhances tolerance to frost and improves germination under unfavourable conditions in transgenic barley plants.
    J. Appl. Genet., 2012. 53(2): p. 133-43
    [PMID:22246661]