PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.98LTB
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family BBR-BPC
Protein Properties Length: 283aa    MW: 31307.9 Da    PI: 10.2823
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.98LTBgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind356.65.1e-10912831301
    GAGA_bind   1 mdddgsre.rnkgyyepaaslkenlglqlmssiaerdaki.rernlalsekkaavaerd.........maflqrdkalaernkalverdnkllalllv 87 
                  md d+  + rn+gyyepa+s+k++lglqlmss++e+     r++ + ls++++a+++rd         m++ +rd+++++       +++k+++++++
  Araip.98LTB   1 MDGDNGLNiRNWGYYEPATSFKSHLGLQLMSSMPEKPLLGgRNAAV-LSGTNGAYHHRDigmppatypMDY-MRDAWISS-------QREKYMNMIPT 89 
                  888888888*************************998766455555.9***********************.********.......889*******6 PP

    GAGA_bind  88 enslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesade 185
                  +         +++++++t+s++++q+          ++ +e + +e+ p+eea+ ++k +++ kkrq +k+pk++kakk+k+ ++++k+++++    +
  Araip.98LTB  90 NP--------SYGSIPETSSTHHMQM----------IPPPELSAKEERPVEEAPVVEKANTTGKKRQGPKVPKSPKAKKPKRGPRVPKDENAPTV--Q 167
                  55........599*************..........23345566677888888888889999999999**************9999977777776..7 PP

    GAGA_bind 186 rskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpv 283
                  r++a+kk++++v+ng++lD+s++P+PvCsCtG+++qCY+WG+GGWqSaCCtt +S+yPLP+stkrrgaRiagrKmS gafkk+LekLaaeGy++snp+
  Araip.98LTB 168 RARAPKKTTEIVINGIDLDISSIPIPVCSCTGTPQQCYRWGSGGWQSACCTTGMSTYPLPMSTKRRGARIAGRKMSIGAFKKVLEKLAAEGYNFSNPI 265
                  9************************************************************************************************* PP

    GAGA_bind 284 DLkdhWAkHGtnkfvtir 301
                  DL+++WAkHGtnkfvtir
  Araip.98LTB 266 DLRTYWAKHGTNKFVTIR 283
                  *****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062173.7E-1131283IPR010409GAGA-binding transcriptional activator
SMARTSM012261.0E-1691283IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MDGDNGLNIR NWGYYEPATS FKSHLGLQLM SSMPEKPLLG GRNAAVLSGT NGAYHHRDIG  60
MPPATYPMDY MRDAWISSQR EKYMNMIPTN PSYGSIPETS STHHMQMIPP PELSAKEERP  120
VEEAPVVEKA NTTGKKRQGP KVPKSPKAKK PKRGPRVPKD ENAPTVQRAR APKKTTEIVI  180
NGIDLDISSI PIPVCSCTGT PQQCYRWGSG GWQSACCTTG MSTYPLPMST KRRGARIAGR  240
KMSIGAFKKV LEKLAAEGYN FSNPIDLRTY WAKHGTNKFV TIR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00253DAPTransfer from AT2G01930Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.98LTB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015966841.10.0protein BASIC PENTACYSTEINE2
RefseqXP_015966842.10.0protein BASIC PENTACYSTEINE2
RefseqXP_016203362.10.0protein BASIC PENTACYSTEINE2
RefseqXP_016203363.10.0protein BASIC PENTACYSTEINE2
RefseqXP_020958387.10.0protein BASIC PENTACYSTEINE2
RefseqXP_025655545.10.0protein BASIC PENTACYSTEINE2 isoform X1
RefseqXP_025655546.10.0protein BASIC PENTACYSTEINE2 isoform X1
SwissprotQ9SKD01e-96BPC1_ARATH; Protein BASIC PENTACYSTEINE1
TrEMBLA0A445D1C40.0A0A445D1C4_ARAHY; Uncharacterized protein
STRINGGLYMA09G30040.40.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23703283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.35e-90basic pentacysteine 2