PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.98TRK
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 123aa    MW: 14420.5 Da    PI: 9.1272
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.98TRKgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR136.91.2e-1163120158
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraet 58 
                  +fY +Y++  GF +rk k  k+  +gei+++tfvC+++g+r+++  +  +++r++++ t
  Araip.98TRK  63 EFYTSYSRLKGFAIRKCKRVKN-AKGEIVSYTFVCNRQGFRHKKWLNkLDRKREHKPIT 120
                  6****************99998.8888***************99777344555555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.6E-963121IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MPDPEDGLLN EETLFDMSML GDEAGFPNMM QTDIEPQAAQ VPSHVSIEDV LKMEFFTPGE  60
AREFYTSYSR LKGFAIRKCK RVKNAKGEIV SYTFVCNRQG FRHKKWLNKL DRKREHKPIT  120
RYR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.98TRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016206315.13e-83protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_025627893.15e-83protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A445ADV12e-74A0A445ADV1_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9185237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18960.14e-08FAR1-related sequence 12