PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.9C0A1
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family LBD
Protein Properties Length: 225aa    MW: 24772.3 Da    PI: 7.152
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.9C0A1genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260136.41e-42551541100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                  +CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++k+l++lpe++r da+ss+vyeA+ar+rdPvyG++g i +lq+q+++l+a+la+++
  Araip.9C0A1  55 PCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVSELQAQLAKAQ 152
                  7***********************************************************************************************99 PP

       DUF260  99 ee 100
                  +e
  Araip.9C0A1 153 AE 154
                  87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.18154155IPR004883Lateral organ boundaries, LOB
PfamPF031959.1E-4355152IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MEYKLNSSPS IPIIHVPTKI SNSPPPPSSS PPNSQSQSPT SCAPPSPPPP VVVSPCAACK  60
ILRRRCVEKC VLAPYFPPTD PLKFTIAHRV FGASNIIKFL QELPESQRAD AVSSMVYEAN  120
ARIRDPVYGC AGAICQLQKQ VSELQAQLAK AQAELVNMHC QQTNLVALIC MEMSTSNTHQ  180
SSSHQEQHHM MMIQPQNNNN NNNHVDMSCF IDDNNLASAW EPLWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-43461662122LOB family transfactor Ramosa2.1
5ly0_B2e-43461662122LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.9C0A1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016174204.11e-165LOB domain-containing protein 1-like
RefseqXP_025679747.11e-165LOB domain-containing protein 1
SwissprotQ9LQR07e-73LBD1_ARATH; LOB domain-containing protein 1
TrEMBLA0A444XT171e-164A0A444XT17_ARAHY; Uncharacterized protein
STRINGAES622282e-94(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130334106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.13e-55LOB domain-containing protein 1