PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.9CH5Z

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

MYB_related

Protein Properties

Length: 151aa MW: 17496.1 Da PI: 8.4812

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.9CH5Z	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	33.8	7.7e-11	36	79	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W+tIa +g t+ qc++r+ k+l Araip.9CH5Z 36 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--CTPSQCRERYEKLL 79 68***************99.****9..79******9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.03E-19	13	82	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.3E-8	15	40	IPR009057	Homeodomain-like
PROSITE profile	PS51294	20.247	30	83	IPR017930	Myb domain
CDD	cd11659	4.73E-30	31	82	No hit	No description
SMART	SM00717	3.7E-10	34	81	IPR001005	SANT/Myb domain
Pfam	PF13921	2.5E-9	38	91	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.8E-11	41	80	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 151 aa Download sequence Send to blast
MRLEPMGSHF FLLVRKSAKQ CKARWYEWLD PSIKKTEWTR EEDEKLLHLA KLMPTQWRTI 60 APIVGCTPSQ CRERYEKLLD AACVKDDNYE PGEIDPNPES KPARPDPVDM DEDEKEMLSE 120 ARARLANTKG KPGRNSSRKP GGLLLCRKRE N

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5mqf_L	4e-60	12	130	37	164	Cell division cycle 5-like protein
5xjc_L	4e-60	12	130	37	164	Cell division cycle 5-like protein
5yzg_L	4e-60	12	130	37	164	Cell division cycle 5-like protein
5z56_L	4e-60	12	130	37	164	Cell division cycle 5-like protein
5z57_L	4e-60	12	130	37	164	Cell division cycle 5-like protein
5z58_L	4e-60	12	130	37	164	Cell division cycle 5-like protein
6ff4_L	4e-60	12	130	37	164	Cell division cycle 5-like protein
6ff7_L	4e-60	12	130	37	164	Cell division cycle 5-like protein
6icz_L	4e-60	12	130	37	164	Cell division cycle 5-like protein
6id0_L	4e-60	12	130	37	164	Cell division cycle 5-like protein
6id1_L	4e-60	12	130	37	164	Cell division cycle 5-like protein
6qdv_O	4e-60	12	130	37	164	Cell division cycle 5-like protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250\|UniProtKB:Q99459, ECO:0000269\|PubMed:17298883, ECO:0000269\|PubMed:17575050, ECO:0000269\|PubMed:8917598}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.9CH5Z

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015875524.1	2e-73	cell division cycle 5-like protein
Refseq	XP_015875562.1	8e-73	cell division cycle 5-like protein
Swissprot	P92948	1e-70	CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBL	A0A444YKL9	1e-107	A0A444YKL9_ARAHY; Uncharacterized protein
STRING	evm.model.supercontig_306.1	2e-72	(Carica papaya)
STRING	Lus10043451	8e-75	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4072	33	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09770.1	5e-73	cell division cycle 5

Publications ? help Back to Top
Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Li S, et al. MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis. Plant Cell, 2018. 30(2): p. 481-494 [PMID:29437988]