PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.9D9Z5

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 385aa MW: 44536 Da PI: 8.8288

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.9D9Z5	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	53	1.1e-16	51	136	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 kfY++Y+k +GFs++++++++ +++i+++ vCs+eg+ +++ + + +t+++ +C a++ v+ +k g w ++k+ l+H+H+++ Araip.9D9Z5 51 KFYKHYSKLAGFSTKIRNTTRD--EDKIKNQLIVCSREGRWKSKISP---TLKTNPSAGLNCPARIYVHIMKdVGLWIISKVILNHSHPCC 136 6**************98877..7779********9998777...999**************999************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.3E-14	51	136	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	8.395	309	345	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence Send to blast
MNESTSNQLN ECNLDNSSET FRFTMQTNCV VDGKFVPKVG MIFKILEEIG KFYKHYSKLA 60 GFSTKIRNTT RDEDKIKNQL IVCSREGRWK SKISPTLKTN PSAGLNCPAR IYVHIMKDVG 120 LWIISKVILN HSHPCCADQA EMLKQYRELS MFVHRTIETH EEAGIRPSKT YQSFVAAAGS 180 HRELELYEDC HIWIPVYLDH HFWAGIRSTQ RSKSIHSFFN KFIIRNSSLR QFQAEREFDA 240 ADFHTVIPCA TKSAIEAQFQ RVYTHEKFRE VQAQFRGKAN CITRSMHSTL GFTTYEVIEQ 300 VSNSTFNKFV VTYDAVSRYV KCHCLLFESR GILCCHSLSV LSFEGGIHTS RAAKMNLYWS 360 QEVRDLMNWC FGHTIYVNLH LSLKS

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence Send to blast

MNESTSNQLN ECNLDNSSET FRFTMQTNCV VDGKFVPKVG MIFKILEEIG KFYKHYSKLA  60
GFSTKIRNTT RDEDKIKNQL IVCSREGRWK SKISPTLKTN PSAGLNCPAR IYVHIMKDVG  120
LWIISKVILN HSHPCCADQA EMLKQYRELS MFVHRTIETH EEAGIRPSKT YQSFVAAAGS  180
HRELELYEDC HIWIPVYLDH HFWAGIRSTQ RSKSIHSFFN KFIIRNSSLR QFQAEREFDA  240
ADFHTVIPCA TKSAIEAQFQ RVYTHEKFRE VQAQFRGKAN CITRSMHSTL GFTTYEVIEQ  300
VSNSTFNKFV VTYDAVSRYV KCHCLLFESR GILCCHSLSV LSFEGGIHTS RAAKMNLYWS  360
QEVRDLMNWC FGHTIYVNLH LSLKS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.9D9Z5

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015960283.1	1e-120	protein FAR1-RELATED SEQUENCE 6-like
TrEMBL	A0A445B8J0	0.0	A0A445B8J0_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	5e-18	far-red elongated hypocotyls 3