PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.9IZ0T

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 456aa MW: 51926 Da PI: 9.1636

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.9IZ0T	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	22.3	4.3e-07	69	112	49	91
FAR1 49 ekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 + +++t+++ +C a++ ++ k g w ++k++l+H+H+++p Araip.9IZ0T 69 SLTEKTNPTASLNCPARIYIHTLKdVGAWIISKVVLDHSHPCCP 112 34788999**********998879*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.9E-5	67	112	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.087	243	279	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0033	254	281	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 456 aa Download sequence Send to blast
MDDSTSDCQL NPGEVDYEFE SNEVLEPLSV VDDQFVPKVG MTFTTLEDAG KFYRNYAKAA 60 EGKWKSKISL TEKTNPTASL NCPARIYIHT LKDVGAWIIS KVVLDHSHPC CPSKAEMLKQ 120 HRELSMFIRR TIENNEEAGM RSTQRSESMH SFFNKTARLF SSSNNTIIAS EAESKQRENQ 180 MLQIFIQSYR VQPNPPLKLS FKMEVQAQFR GKANCITRLT NSALGYSVYE VGEQVSSSIF 240 NKFVVTYDSV AAEVKCQCLL FESRGILCRH TLSVLSFEQV SQVSPRYILE RWSKKVKRRH 300 THIKSSHDEP LLEPRSKRFD QLVFRSQNIC EFASESEELT AILHRAYDNV MAEMESLKAK 360 RKGTCSLSHE DANLESVNEL QSPPRIRTRQ RPKNRLGSKL DKQIANATKK KKTKVLSEIN 420 LFNATLVVHS NSSQYQGHIM NYQFRVPGAG DNSLGV

Sequence ? help Back to Top

Protein Sequence Length: 456 aa Download sequence Send to blast

MDDSTSDCQL NPGEVDYEFE SNEVLEPLSV VDDQFVPKVG MTFTTLEDAG KFYRNYAKAA  60
EGKWKSKISL TEKTNPTASL NCPARIYIHT LKDVGAWIIS KVVLDHSHPC CPSKAEMLKQ  120
HRELSMFIRR TIENNEEAGM RSTQRSESMH SFFNKTARLF SSSNNTIIAS EAESKQRENQ  180
MLQIFIQSYR VQPNPPLKLS FKMEVQAQFR GKANCITRLT NSALGYSVYE VGEQVSSSIF  240
NKFVVTYDSV AAEVKCQCLL FESRGILCRH TLSVLSFEQV SQVSPRYILE RWSKKVKRRH  300
THIKSSHDEP LLEPRSKRFD QLVFRSQNIC EFASESEELT AILHRAYDNV MAEMESLKAK  360
RKGTCSLSHE DANLESVNEL QSPPRIRTRQ RPKNRLGSKL DKQIANATKK KKTKVLSEIN  420
LFNATLVVHS NSSQYQGHIM NYQFRVPGAG DNSLGV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.9IZ0T

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ637178	0.0	HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020986710.1	1e-174	protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBL	A0A445A1M9	0.0	A0A445A1M9_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	6e-19	far-red elongated hypocotyls 3