PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.9N4E5
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family YABBY
Protein Properties Length: 200aa    MW: 22315.2 Da    PI: 8.7339
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.9N4E5genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY23.91.3e-071133224
        YABBY  2 dvfssseqvCyvqCnfCntilav 24
                 d++  se++Cyv+CnfCnt+la 
  Araip.9N4E5 11 DLVPPSEHLCYVRCNFCNTVLAC 33
                 77899****************86 PP
2YABBY103.44.6e-323315039163
        YABBY  39 CGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevprvpp.virPPekrqrvPsaynrfike 135
                  CGhC++l  ++ +      + ++  ++++   + ++l  ++  +   ++ + s+s+s +    +++++  +p++ p v++PPek+ r Psaynrf+ke
  Araip.9N4E5  33 CGHCSNLSFLSTRPPPPPAPFSHTHQTTT---IDHTLTLQGF-YGDSKKGQGSSSSSSP----TTSNESVSPKAAPfVVKPPEKKHRLPSAYNRFMKE 122
                  99999876644444433333332212222...2222222222.2222222222222222....35566677777777********************* PP

        YABBY 136 eiqrikasnPdishreafsaaaknWahf 163
                  eiqrika+nP+i hreafsaaaknWa f
  Araip.9N4E5 123 EIQRIKAANPEIPHREAFSAAAKNWARF 150
                  **************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.4E-3915150IPR006780YABBY protein
SuperFamilySSF470953.53E-895149IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.103.4E-5104149IPR009071High mobility group box domain
CDDcd013901.30E-5111147No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010254Biological Processnectary development
GO:0010582Biological Processfloral meristem determinacy
GO:0048479Biological Processstyle development
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MNQQDEKATM DLVPPSEHLC YVRCNFCNTV LACGHCSNLS FLSTRPPPPP APFSHTHQTT  60
TIDHTLTLQG FYGDSKKGQG SSSSSSPTTS NESVSPKAAP FVVKPPEKKH RLPSAYNRFM  120
KEEIQRIKAA NPEIPHREAF SAAAKNWARF IPNSPASSVA ARMREWWQKE IFGEKSNVGI  180
GHYAIMYEIP DHQFINEGKT
Functional Description ? help Back to Top
Source Description
UniProtRegulates carpel specification in flower development. Severe or intermediate mutation in DL causes complete or partial homeotic conversion of carpels into stamens without affecting the identities of other floral organs. Interacts antagonistically with class B genes and controls floral meristem determinacy. Regulates midrib formation in leaves probably by inducing cell proliferation in the central region of the leaf. {ECO:0000269|PubMed:14729915}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00220DAPTransfer from AT1G69180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.9N4E5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR0119241e-110KR011924.1 Thermopsis turcica CRABS CLAW mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016200793.17e-93protein CRABS CLAW
RefseqXP_025650906.17e-93protein CRABS CLAW
SwissprotQ76EJ02e-49YABDL_ORYSJ; Protein DROOPING LEAF
TrEMBLA0A0U2DBV12e-81A0A0U2DBV1_9FABA; CRABS CLAW (Fragment)
TrEMBLA0A371FU653e-81A0A371FU65_MUCPR; Protein DROOPING LEAF (Fragment)
STRINGGLYMA02G13350.22e-81(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102593040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69180.18e-42YABBY family protein