PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.9N5S4

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

NAC

Protein Properties

Length: 338aa MW: 39021.9 Da PI: 6.3233

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.9N5S4	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	180.8	3.4e-56	10	139	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 +ppGfrFhPtdeelv++yL+kkv+++k+el +vik+vd+yk+ePwdL++ ++ ee+ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk+++s Araip.9N5S4 10 VPPGFRFHPTDEELVDYYLRKKVSSRKIEL-DVIKDVDLYKIEPWDLQEicRIGReEENEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIYS- 105 69**************************.9***********954544332666**********************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129 k+ l+g++ktLvfykgrap+g+k+dW+mheyrle Araip.9N5S4 106 KHDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 139 8899**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.09E-57	7	144	IPR003441	NAC domain
PROSITE profile	PS51005	55.228	10	163	IPR003441	NAC domain
Pfam	PF02365	7.4E-29	11	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MENMNSFCHV PPGFRFHPTD EELVDYYLRK KVSSRKIELD VIKDVDLYKI EPWDLQEICR 60 IGREEENEWY FFSHKDKKYP TGTRTNRATA AGFWKATGRD KAIYSKHDLI GMRKTLVFYK 120 GRAPNGQKSD WIMHEYRLET DENAAPQAIF KKRVTTMRKM MMREHDESPN SSCWYDDQEF 180 MMMESPTKQQ SSILLHQSTN NHSNLMQLPP YPLIKKELHH PSSSSSSYPF LQLPLLESHQ 240 QSAAAPSSIS EQLIMPPPIG GGEQVPSFQS FFNNEQQEVG VLDWRVLDKF VASQLSQDDN 300 HASSNSIVQD LTQEIVMVPH NDAASTSNSL TSPIDLWK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	6e-48	9	138	14	140	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:16103214, ECO:0000269\|PubMed:25148240}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.9N5S4

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016188089.1	0.0	NAC domain-containing protein 7
Refseq	XP_020973905.1	0.0	NAC domain-containing protein 7
Swissprot	Q9FWX2	1e-112	NAC7_ARATH; NAC domain-containing protein 7
TrEMBL	A0A445A6K8	0.0	A0A445A6K8_ARAHY; Uncharacterized protein
STRING	GLYMA09G36600.1	1e-134	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1269	33	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12260.1	4e-98	NAC 007

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]