PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.9N7IJ

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 474aa MW: 53914.5 Da PI: 9.6205

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.9N7IJ	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	55.2	2.3e-17	61	147	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 kfY++YAk +GFs+r++ ++++ +ei+++ +Cs+egk +++ +++t+++ +C a++ ++ k g w ++k++l+H+H+++p Araip.9N7IJ 61 KFYRNYAKAAGFSTRVRCTNRK--GNEIKNQLITCSREGKWKSKIPP---TEKTNPTAGLNCPARIYIHTLKdVGAWIISKVVLDHSHPCCP 147 6*************998776..8889*********998776...8999**********998879*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-14	61	147	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.235	290	326	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	5.7E-5	292	323	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0046	301	328	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 474 aa Download sequence Send to blast
MDHSTSDSQL NPGEVDYEFG SNEVPELVYL QLMALKPLSV VDDELVPKVG MTFTTLEDAG 60 KFYRNYAKAA GFSTRVRCTN RKGNEIKNQL ITCSREGKWK SKIPPTEKTN PTAGLNCPAR 120 IYIHTLKDVG AWIISKVVLD HSHPCCPSKA EMLKQHRELS MSIRRTIENN EEAGMRSTQR 180 SKSMHSFFNK YITRNSSLIQ FVKQYDNCLG SREQAERESD AADFHMLIPC ATKSSIEAQF 240 QDAYTHAKFR EVQAQFRGKA NCITRLKNSA LGYSVYDVGE QVSSSIFNKF VVTYDSVAAE 300 VKCECLLFES RGILCRHALS VLSFEQASQV SPRYILERWS KKVKRRHTHI KSSHDEPLME 360 PRSKRFDQLV FRSQNICEFA SESEELTAIL HRAYDNVMAE MKALKAKRKG TSLSHEDANL 420 ESVNELQSPP RIRTRGRPKN RLGSKLEKQI ANGTKKKKTK VLSERFPAGI CYQS

Sequence ? help Back to Top

Protein Sequence Length: 474 aa Download sequence Send to blast

MDHSTSDSQL NPGEVDYEFG SNEVPELVYL QLMALKPLSV VDDELVPKVG MTFTTLEDAG  60
KFYRNYAKAA GFSTRVRCTN RKGNEIKNQL ITCSREGKWK SKIPPTEKTN PTAGLNCPAR  120
IYIHTLKDVG AWIISKVVLD HSHPCCPSKA EMLKQHRELS MSIRRTIENN EEAGMRSTQR  180
SKSMHSFFNK YITRNSSLIQ FVKQYDNCLG SREQAERESD AADFHMLIPC ATKSSIEAQF  240
QDAYTHAKFR EVQAQFRGKA NCITRLKNSA LGYSVYDVGE QVSSSIFNKF VVTYDSVAAE  300
VKCECLLFES RGILCRHALS VLSFEQASQV SPRYILERWS KKVKRRHTHI KSSHDEPLME  360
PRSKRFDQLV FRSQNICEFA SESEELTAIL HRAYDNVMAE MKALKAKRKG TSLSHEDANL  420
ESVNELQSPP RIRTRGRPKN RLGSKLEKQI ANGTKKKKTK VLSERFPAGI CYQS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.9N7IJ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ637178	0.0	HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020993575.1	0.0	protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBL	A0A445A850	0.0	A0A445A850_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	4e-29	far-red elongated hypocotyls 3