PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.9UC54
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family Whirly
Protein Properties Length: 106aa    MW: 11795.5 Da    PI: 8.2279
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.9UC54genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly729.8e-2328902285
       Whirly 22 dsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgs 85
                  ++++k++ +G +ll++a+++a r+ydW +kq+f+ls  e+++++ l+++esceffhd  +++s
  Araip.9UC54 28 SGQAFKISIEGYVLLQFAPTVASRQYDWTRKQVFSLSMGEMGTVI-LGARESCEFFHDRIKGKS 90
                 47889*************************************988.9************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF085366.5E-212590IPR013742Plant transcription factor
SuperFamilySSF544478.63E-162894IPR009044ssDNA-binding transcriptional regulator
Gene3DG3DSA:2.30.31.105.0E-192990IPR009044ssDNA-binding transcriptional regulator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 106 aa     Download sequence    Send to blast
MFKNILSTCL AHVPFTKPLL AASWFFSSGQ AFKISIEGYV LLQFAPTVAS RQYDWTRKQV  60
FSLSMGEMGT VILGARESCE FFHDRIKGKS ISSDFGEESG GSDRTI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4koo_A2e-2331903898Single-stranded DNA-binding protein WHY1, chloroplastic
4koo_B2e-2331903898Single-stranded DNA-binding protein WHY1, chloroplastic
4koo_C2e-2331903898Single-stranded DNA-binding protein WHY1, chloroplastic
4koo_D2e-2331903898Single-stranded DNA-binding protein WHY1, chloroplastic
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA and RNA binding protein that maintains plastid genome stability by preventing break-induced and short homology-dependent illegitimate recombinations. Functions in RNA metabolism and is involved in the maturation of the atpF and 23S ribosomal RNAs. {ECO:0000269|PubMed:18676978, ECO:0000269|PubMed:19666500}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.9UC54
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016190967.11e-29single-stranded DNA-binding protein WHY1, chloroplastic isoform X1
RefseqXP_016190968.11e-29single-stranded DNA-binding protein WHY1, chloroplastic isoform X2
RefseqXP_025639006.11e-29single-stranded DNA-binding protein WHY1, chloroplastic
SwissprotB2LXS72e-23WHY1_MAIZE; Single-stranded DNA-binding protein WHY1, chloroplastic
TrEMBLA0A445DP243e-28A0A445DP24_ARAHY; Uncharacterized protein
STRINGGLYMA18G16200.15e-25(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF64163251
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14410.11e-24ssDNA-binding transcriptional regulator
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]