PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.9X5LK

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

YABBY

Protein Properties

Length: 175aa MW: 19715.2 Da PI: 6.5779

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.9X5LK	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	168.1	6e-52	2	143	20	166
YABBY 20 tilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevprvp 113 t++ vsvP +s+++vvtvrCGhCtsllsvn++kas +lla+ s ++ ++ ++ + +n+ +n +++ +++ s+ +e+v+ + Araip.9X5LK 2 TMMQVSVPCSSMSMVVTVRCGHCTSLLSVNMMKASfvplHLLASLST------HHHHHSKEEDANNIATNSSSSIMMMNYSSN-D---CAEEDVTTIN 89 899**************************9998444444444443......233333344445555555544444444444.2...2333444444 PP YABBY 114 p.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPki 166 + v++PPekrqr Psaynrfikeei+r+ka+nP+++h+eafs+aaknWa fP+ Araip.9X5LK 90 NvVNKPPEKRQRTPSAYNRFIKEEIKRLKAENPEMAHKEAFSTAAKNWANFPPT 143 4399**********************************************75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	6.2E-53	2	144	IPR006780	YABBY protein
SuperFamily	SSF47095	9.03E-10	89	143	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	4.5E-7	94	144	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:0048481	Biological Process	plant ovule development
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
MTMMQVSVPC SSMSMVVTVR CGHCTSLLSV NMMKASFVPL HLLASLSTHH HHHSKEEDAN 60 NIATNSSSSI MMMNYSSNDC AEEDVTTINN VVNKPPEKRQ RTPSAYNRFI KEEIKRLKAE 120 NPEMAHKEAF STAAKNWANF PPTQLNGDEE ICNQKEQFAD LDSQVDRHSH SHELI

Functional Description ? help Back to Top
Source	Description
UniProt	Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:9093862, ECO:0000269\|PubMed:9118807}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.9X5LK

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:12183381}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016200725.1	1e-119	axial regulator YABBY 4
Refseq	XP_025650841.1	1e-119	axial regulator YABBY 4
Swissprot	Q9LDT3	9e-49	YAB4_ARATH; Axial regulator YABBY 4
TrEMBL	A0A444Z6X5	1e-127	A0A444Z6X5_ARAHY; Uncharacterized protein
STRING	AES96167	1e-81	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6144	28	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23420.1	1e-40	YABBY family protein

Publications ? help Back to Top
Lora J,Hormaza JI,Herrero M Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT). New Phytol., 2015. 208(2): p. 584-95 [PMID:25991552] Skinner DJ,Brown RH,Kuzoff RK,Gasser CS Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function. BMC Plant Biol., 2016. 16(1): p. 143 [PMID:27350128] Simon MK,Skinner DJ,Gallagher TL,Gasser CS Integument Development in Arabidopsis Depends on Interaction of YABBY Protein INNER NO OUTER with Coactivators and Corepressors. Genetics, 2017. 207(4): p. 1489-1500 [PMID:28971961]