PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.A0C0L

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

LBD

Protein Properties

Length: 119aa MW: 13678.9 Da PI: 8.6412

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.A0C0L	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	27.6	8.3e-09	15	42	1	28
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpk 28 +CaaC++l rkC k+C l yfpa+++k Araip.A0C0L 15 PCAACRMLSRKCDKKCLLVSYFPADKAK 42 7***********************9976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	9.929	14	114	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.3E-6	15	42	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 119 aa Download sequence Send to blast
MDIHGVAKTE RSHQPCAACR MLSRKCDKKC LLVSYFPADK AKARLRDLVY GSSGAIFQLQ 60 KMIEELKVEL ESIRAWVFEL RQQKGHYLLM MMIHNHNYNT NTLSSSDLMA FDDSSSVHL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.A0C0L

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022759592.1	2e-27	LOB domain-containing protein 1-like

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	2e-14	LOB domain-containing protein 1