PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.A1FFI
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 184aa    MW: 20714.5 Da    PI: 6.3506
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.A1FFIgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.72.4e-141171724296
                  TS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
           B3  42 sgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                   ++sW+++++   k+ ++++  +GWk+F+ +n+L++gD +vF+l+++se++lv++v
  Araip.A1FFI 117 GSKSWDMQYCGlGKSYKKFFNHRGWKKFAVDNHLEVGDACVFELKESSEEKLVFQV 172
                  469******886666677999***********************988999898876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.001395178IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.3E-12115176IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.31E-12115176IPR015300DNA-binding pseudobarrel domain
PfamPF023622.0E-12117172IPR003340B3 DNA binding domain
PROSITE profilePS5086310.771118178IPR003340B3 DNA binding domain
CDDcd100171.03E-12119176No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
LSRRYEWFFI LEREETSNYF TPSPPGARYL TSNLVWHVDP SPAPHKMSTS NSKVNFIASS  60
SGVVIENIAP LKTVPGPTTN LPGDDDIQPL SGCPFYHPVS NELTLPSAEV PAILKYGSKS  120
WDMQYCGLGK SYKKFFNHRG WKKFAVDNHL EVGDACVFEL KESSEEKLVF QVQILRGDLP  180
ETFL
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.A1FFI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016198064.13e-94B3 domain-containing protein Os06g0112300-like
RefseqXP_020976733.13e-94B3 domain-containing protein Os06g0112300-like
RefseqXP_025646901.13e-94B3 domain-containing protein Os06g0112300
RefseqXP_025646902.13e-94B3 domain-containing protein Os06g0112300
TrEMBLA0A445DHD63e-88A0A445DHD6_ARAHY; Uncharacterized protein
STRINGXP_007157818.13e-34(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97222640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.18e-07B3 family protein