PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.A1WYM

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

NF-YC

Protein Properties

Length: 118aa MW: 13681.5 Da PI: 8.7739

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.A1WYM	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	93.5	1.8e-29	16	98	4	83
NF-YC 4 sfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaav 83 + w+ q +e+a+dfk + lar++k++k++edv +isae+Pv+l+kac+lfi ++tl+sw +a++nkr+t++ +di++++ Araip.A1WYM 16 NLWSFQrrgMEQASDFKSGLFSLARVRKMMKVEEDVDRISAEVPVVLAKACDLFIRNITLQSWHQAQKNKRSTIQGQDINSTM 98 556665566**********************************************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	2.7E-20	23	100	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	5.3E-24	26	96	IPR009072	Histone-fold
Pfam	PF00808	3.9E-16	38	96	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 118 aa Download sequence Send to blast
MGNQNSTQQH QIEIENLWSF QRRGMEQASD FKSGLFSLAR VRKMMKVEED VDRISAEVPV 60 VLAKACDLFI RNITLQSWHQ AQKNKRSTIQ GQDINSTMDS FRDACHNIEY FKRLMSAA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	2e-21	21	98	3	80	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.A1WYM

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016169168.1	2e-84	nuclear transcription factor Y subunit C-1-like
Refseq	XP_025670733.1	2e-84	nuclear transcription factor Y subunit C-1-like
TrEMBL	A0A445C211	5e-75	A0A445C211_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF23344	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48590.1	1e-25	nuclear factor Y, subunit C1