PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.A2GBD
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family NF-YC
Protein Properties Length: 118aa    MW: 13787.6 Da    PI: 8.2545
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.A2GBDgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC87.31.6e-271899384
        NF-YC  3 ksfwekqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavt 84
                  sf  +++e+a+dfk   + l r++k++k++edv +isae+Pv+l+kac+lfi ++tl+sw +a++nkr+ ++ +di+++++
  Araip.A2GBD 18 WSFQRREVEQASDFKSGLFSLDRVRKMMKVEEDVDRISAEVPVVLAKACDLFIRNVTLQSWHQAQKNKRSIIQGQDINSTMN 99
                 34455569*********************************************************************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471135.2E-182199IPR009072Histone-fold
Gene3DG3DSA:1.10.20.102.9E-212796IPR009072Histone-fold
PfamPF008081.8E-143996IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MGNQNSTHQH QIEIENLWSF QRREVEQASD FKSGLFSLDR VRKMMKVEED VDRISAEVPV  60
VLAKACDLFI RNVTLQSWHQ AQKNKRSIIQ GQDINSTMNS FRDACHNIEY FKRLMSAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B1e-202199381NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.A2GBD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016169168.13e-78nuclear transcription factor Y subunit C-1-like
RefseqXP_025670733.13e-78nuclear transcription factor Y subunit C-1-like
TrEMBLA0A445C2114e-74A0A445C211_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2334423
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.23e-25nuclear factor Y, subunit C4