PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.A53VI
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 477aa    MW: 53847.9 Da    PI: 7.8318
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.A53VIgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR133.11.9e-101091683491
         FAR1  34 vCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                    +++g re+++ +  +++r++++etrt+C+ak++v ++k   kw +++l++eHnHelap
  Araip.A53VI 109 AVNQQGLREKKHYErVDRKRTHKPETRTNCNAKIVVFLDKsCRKWGMKTLVEEHNHELAP 168
                  568899999988875677788999**************9989***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-8108168IPR004330FAR1 DNA binding domain
PROSITE profilePS5096610.262277313IPR007527Zinc finger, SWIM-type
SMARTSM005750.0056288315IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MAARQSCQVI GLMVGAPIRE MGNDLNELEE PLTEEGDSGH SDSEYDGRDG GGSYMHAAAE  60
DHANSENVMG KQFSCPDPVI ASVLLSAEFN GIGDAYASYV AYAKGIGFAV NQQGLREKKH  120
YERVDRKRTH KPETRTNCNA KIVVFLDKSC RKWGMKTLVE EHNHELAPQE FTNVMAPHRK  180
IPEGHKSGNC LLELVKNLDR VVKDYRNNEF IADYKTLYSN PVLTMGLEAL ERSVSKFYTR  240
EIFYEVQKQI EGVGPLDSIG GTEKFMFRKY QKPYHVYSVF VDRSCDKYEC SCKLWERLEI  300
PCCHIFCVLK ELEKEELLSR LVLRRWCKDA KVADSSSQHA SVSPTDGFRV RYSALWSACL  360
SLCFTAAQCT ETYNTTITEV ARMSREFESL GGIGQRSSRV QVGADETHIL DPKIIRSKGA  420
PRGSTNANNG RRCRRCLRFG HDRRNCTAMD DDVVDEDGGS GCRPVYTSGK RSRRKLM
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.A53VI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020964757.10.0protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBLA0A445AIV50.0A0A445AIV5_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1663528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-08FAR1-related sequence 5