PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.A5G20

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 204aa MW: 23308.2 Da PI: 6.7825

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.A5G20	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	55.3	2.1e-17	79	168	1	89
FAR1 1 kfYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 +fY +YAk+vGF +r+++++ k+++ +++ + Cs eg+re++ k+ + r + t g ka++ v +++ +++w+v+klel+H+H++ Araip.A5G20 79 EFYTNYAKKVGFVTRIRNTNFDktrKDSKIPVNQSLHCSHEGYRESRAKA---TTRVKRITTAGYKARMYVMLDRqKDNWMVSKLELKHTHPC 168 6***********999887664445555668999********999...7778889999*****9998*************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.5E-15	79	169	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MEQAICEGAS YGTAYDDSDQ YNSCDVNVPS LSEDDTQHVD KGKESGSVIE VVDDAMAVNH 60 ELPDHTGIPL DEIPYRAQEF YTNYAKKVGF VTRIRNTNFD KTRKDSKIPV NQSLHCSHEG 120 YRESRAKATT RVKRITTAGY KARMYVMLDR QKDNWMVSKL ELKHTHPCSA KQAVHYTEYM 180 ELTMHAKCTF MTNVECGFQS IFKV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.A5G20

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020966746.1	1e-137	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A444ZPS2	1e-128	A0A444ZPS2_ARAHY; Uncharacterized protein
TrEMBL	A0A444ZPS5	1e-124	A0A444ZPS5_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF30369	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	1e-12	FAR1 family protein