PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.A6RDX
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family M-type_MADS
Protein Properties Length: 295aa    MW: 33247.4 Da    PI: 10.0384
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.A6RDXgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF30.54.6e-101033225
                 ---SHHHHHHHHHHHHHHHHHHHH CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAe 25
                 ri+n++ rqvtfsk rng+lKKA+
  Araip.A6RDX 10 RIDNSTSRQVTFSKGRNGLLKKAK 33
                 8**********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554556.41E-10134IPR002100Transcription factor, MADS-box
SMARTSM004321.6E-6151IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.68134IPR002100Transcription factor, MADS-box
PRINTSPR004047.2E-10323IPR002100Transcription factor, MADS-box
PfamPF003199.9E-81034IPR002100Transcription factor, MADS-box
PRINTSPR004047.2E-102338IPR002100Transcription factor, MADS-box
SuperFamilySSF1034731.06E-553229IPR020846Major facilitator superfamily domain
PfamPF015294.9E-8159241IPR001594Zinc finger, DHHC-type, palmitoyltransferase
SuperFamilySSF633802.32E-7228276IPR017938Riboflavin synthase-like beta-barrel
Gene3DG3DSA:2.40.30.102.5E-10234280No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0016491Molecular Functionoxidoreductase activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MGRGNISIRR IDNSTSRQVT FSKGRNGLLK KAKDYPFSLM LKHLRHQFSS YDSGYAILVV  60
AILFTFLVLM LLFLTSSRDP GIIPRNSHQP EKELRYESVD GGGGRQTPSL QFSRIKDVII  120
NGHTIRVNVL FFIYALFLTS FALFLSVFHL FFRGLSDAQR NYHYLFLFVS SATLLCIYVF  180
SISDYYIKVR VDNYDGTVWK AMKESPASVI LMAYCFISLW FVGGLTGFHL YLIGTNQVSY  240
REGQSIGVIP DGIDKNGKPH KLGLYSIASS ALGDLKQGAQ VFHSSLTQEA TNRNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1qfy_A6e-152282745298PROTEIN (FERREDOXIN: NADP+ REDUCTASE)
1qfy_B6e-152282745298PROTEIN (FERREDOXIN: NADP+ REDUCTASE)
1qfz_A6e-152282745298PROTEIN (FERREDOXIN:NADP+ REDUCTASE)
1qfz_B6e-152282745298PROTEIN (FERREDOXIN:NADP+ REDUCTASE)
1qg0_A7e-152282745298PROTEIN (FERREDOXIN:NADP+ REDUCTASE)
1qg0_B7e-152282745298PROTEIN (FERREDOXIN:NADP+ REDUCTASE)
1qga_A6e-152282745298PROTEIN (FERREDOXIN:NADP+ REDUCTASE)
1qga_B6e-152282745298PROTEIN (FERREDOXIN:NADP+ REDUCTASE)
2xnc_A7e-1522827467113FERREDOXIN--NADP REDUCTASE, LEAF ISOZYME, CHLOROPLASTIC
2xnc_B7e-1522827467113FERREDOXIN--NADP REDUCTASE, LEAF ISOZYME, CHLOROPLASTIC
3mhp_A6e-152282743985Ferredoxin--NADP reductase, leaf isozyme, chloroplastic
3mhp_B6e-152282743985Ferredoxin--NADP reductase, leaf isozyme, chloroplastic
4af6_A7e-152282745298FERREDOXIN--NADP REDUCTASE, LEAF ISOZYME, CHLOROPLASTIC
4af6_B7e-152282745298FERREDOXIN--NADP REDUCTASE, LEAF ISOZYME, CHLOROPLASTIC
4af7_A7e-152282745298FERREDOXIN--NADP REDUCTASE, LEAF ISOZYME, CHLOROPLASTIC
4af7_B7e-152282745298FERREDOXIN--NADP REDUCTASE, LEAF ISOZYME, CHLOROPLASTIC
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtS-acyltransferase involved in protein lipid modification. {ECO:0000269|PubMed:22968831, ECO:0000269|Ref.6}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.A6RDX
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150412e-71AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016168661.11e-112LOW QUALITY PROTEIN: protein S-acyltransferase 8-like
SwissprotQ9SB582e-76ZDH19_ARATH; Protein S-acyltransferase 8
TrEMBLA0A444Y0T61e-119A0A444Y0T6_ARAHY; Uncharacterized protein
STRINGGLYMA16G27910.11e-82(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.22e-12AGAMOUS-like 16
Publications ? help Back to Top
  1. Nühse TS,Stensballe A,Jensen ON,Peck SC
    Phosphoproteomics of the Arabidopsis plasma membrane and a new phosphorylation site database.
    Plant Cell, 2004. 16(9): p. 2394-405
    [PMID:15308754]
  2. Bock KW, et al.
    Integrating membrane transport with male gametophyte development and function through transcriptomics.
    Plant Physiol., 2006. 140(4): p. 1151-68
    [PMID:16607029]
  3. Batistic O
    Genomics and localization of the Arabidopsis DHHC-cysteine-rich domain S-acyltransferase protein family.
    Plant Physiol., 2012. 160(3): p. 1597-612
    [PMID:22968831]