PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.A8GVJ
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family HSF
Protein Properties Length: 122aa    MW: 14362.7 Da    PI: 10.4233
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.A8GVJgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind507.9e-162414089
                  THHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS
  HSF_DNA-bind 40 vLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89
                  +Lp+yFkh+nf+SFvRQLn+YgFkkv  ++         weF+++  +++
   Araip.A8GVJ  2 LLPNYFKHNNFSSFVRQLNTYGFKKVVADR---------WEFANEL-RRK 41
                  79************************9998.........7777654.333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004155.2E-5152IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.9E-12242IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.18E-11237IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.3E-16242IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.1E-10214IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340327IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-101527IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
DLLPNYFKHN NFSSFVRQLN TYGFKKVVAD RWEFANELRR KNLMLLSELT HMKNLYNDII  60
YFIQNHLKPA SSPSHHNQTL TIPKLVELDS SPKGSRMMMM KLFGVPLSGK KRLHPDNIFQ  120
QD
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.A8GVJ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP0140081e-33KP014008.1 Populus simonii heat shock transcription factor B4a (HsfB4a) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016193165.14e-48heat stress transcription factor B-4d
RefseqXP_025642025.14e-48heat stress transcription factor B-4d
TrEMBLA0A445A9C72e-48A0A445A9C7_ARAHY; Uncharacterized protein
STRINGXP_002533289.13e-29(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16123393
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.15e-21heat shock transcription factor B4