PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.AA00I

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 500aa MW: 57163.6 Da PI: 8.6224

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.AA00I	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	51.1	4.4e-16	51	137	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 kfY +YAk +GFs+r++ ++++ +ei+++ +Cs+e k +++ + +++t+++ +C a++ ++ k g w ++k++l+H+H+ +p Araip.AA00I 51 KFYMNYAKAAGFSTRVRCTNRK--GNEIKNQLITCSREEKWKSKISP---TEKTNPTVGLNCPARIYIHTLKdVGAWIISKVVLDHSHPYCP 137 6*************998776..8889*******99998776...8999**********998879************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.7E-13	51	137	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	8.815	287	323	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	4.1E-4	288	320	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 500 aa Download sequence Send to blast
MDHSTSDCQL NPGEVDYEFE SNEVPEPLSV VDDELVPKVG MTFTTLEDAG KFYMNYAKAA 60 GFSTRVRCTN RKGNEIKNQL ITCSREEKWK SKISPTEKTN PTVGLNCPAR IYIHTLKDVG 120 AWIISKVVLD HSHPYCPSKA EMLKQHRELS ISVQRPSQWV PIYLDHHFWV GMRSTQRSES 180 THSFFNKYIT RNSSLIEFVK QYDNCLGSRE QAERESDAAD FHTVIPCATK SSIEAQFQDA 240 YTHQKFREVQ AQFRGNANCI TRLTNSALGY SVYEVGEQVS SSIFNKFVVT YDSVAVEVKC 300 QCLLFESRAI LCRHALSVLS FEQVSQVSPR YILERWSKKV KRRHTHIKSS HDEPLMEPRS 360 KRFDQLVFRS QNICEFAFES EELTTILHRA YDNVMAEMES LKAKRKGTYS LSHEDANLES 420 VNELQSPPRI RTRGRPKNRL GSKLDKQIAN TIKKKKTKVL SEINLFDAAS AVHSNSSQYQ 480 GHVMNYQFRV PAAGDNSLGV

Sequence ? help Back to Top

Protein Sequence Length: 500 aa Download sequence Send to blast

MDHSTSDCQL NPGEVDYEFE SNEVPEPLSV VDDELVPKVG MTFTTLEDAG KFYMNYAKAA  60
GFSTRVRCTN RKGNEIKNQL ITCSREEKWK SKISPTEKTN PTVGLNCPAR IYIHTLKDVG  120
AWIISKVVLD HSHPYCPSKA EMLKQHRELS ISVQRPSQWV PIYLDHHFWV GMRSTQRSES  180
THSFFNKYIT RNSSLIEFVK QYDNCLGSRE QAERESDAAD FHTVIPCATK SSIEAQFQDA  240
YTHQKFREVQ AQFRGNANCI TRLTNSALGY SVYEVGEQVS SSIFNKFVVT YDSVAVEVKC  300
QCLLFESRAI LCRHALSVLS FEQVSQVSPR YILERWSKKV KRRHTHIKSS HDEPLMEPRS  360
KRFDQLVFRS QNICEFAFES EELTTILHRA YDNVMAEMES LKAKRKGTYS LSHEDANLES  420
VNELQSPPRI RTRGRPKNRL GSKLDKQIAN TIKKKKTKVL SEINLFDAAS AVHSNSSQYQ  480
GHVMNYQFRV PAAGDNSLGV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.AA00I

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ637178	0.0	HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020986710.1	0.0	protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBL	A0A445A1M9	0.0	A0A445A1M9_ARAHY; Uncharacterized protein
TrEMBL	A0A445A850	0.0	A0A445A850_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	3e-30	FAR1 family protein