PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.AB5PU

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 164aa MW: 18736.1 Da PI: 6.2698

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.AB5PU	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	49.1	1.9e-15	51	137	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 kfY++YAk +GFs+r+++++++ ++ei+++ + s+e k +++ + +++t+++ +C a + ++ k g w ++k++l+H+H+++p Araip.AB5PU 51 KFYRNYAKAAGFSIRVRSTNRK--ENEIKNQLITYSREEKWKSKISP---TEKTNSTAGLNCPAGIYIHTLKdVGAWIISKIVLDHSHPCCP 137 6**************98887..55677777777777777776555...899999********998879*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.3E-13	51	137	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
MDDSTSDCQL NQGEVDFEFE SNEVPEPLSV VDDKFVPKVG MTFTTLEDAG KFYRNYAKAA 60 GFSIRVRSTN RKENEIKNQL ITYSREEKWK SKISPTEKTN STAGLNCPAG IYIHTLKDVG 120 AWIISKIVLD HSHPCCPSKA EMLKQYRELS MSIRRTIENN EGWY

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.AB5PU

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ637178	1e-176	HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020992539.1	1e-101	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_020997160.1	1e-101	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_020997362.1	1e-101	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A444YSY6	1e-105	A0A444YSY6_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	1e-11	FAR1 family protein