PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.AC5JZ

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

Trihelix

Protein Properties

Length: 222aa MW: 25412.1 Da PI: 9.2193

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.AC5JZ	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	90.6	1.7e-28	51	132	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++qe+++ i++r e+e+++ ++k++k+lWe vs+kmrergf+rsp+qCk+kw+nl +ryk ++++ ++ s++cp+f++l+ Araip.AC5JZ 51 QWSQQETREFIAIRAELERDFTASKRNKTLWEVVSSKMRERGFRRSPEQCKCKWKNLVNRYKGKETSDPEH----SRQCPFFEELH 132 7**************************************************************999986....899****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	1.4E-4	48	110	IPR001005	SANT/Myb domain
Pfam	PF13837	7.9E-24	50	133	No hit	No description
CDD	cd12203	1.85E-28	50	115	No hit	No description
PROSITE profile	PS50090	7.654	52	108	IPR017877	Myb-like domain

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MFGGEDARAA RLAMVAPPQP QMLNPATSSV ISGEISPTTA GREERVPAQP QWSQQETREF 60 IAIRAELERD FTASKRNKTL WEVVSSKMRE RGFRRSPEQC KCKWKNLVNR YKGKETSDPE 120 HSRQCPFFEE LHAVFTERAR NMQRLHLESE ARSAQTKKGV KRSSGERSSE EYSEDDEEVE 180 DDSEEEKPSR SNARKRKVDK TDKSSKANNP SNTFSNTARN AQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ebi_A	2e-15	52	118	7	73	DNA binding protein GT-1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.AC5JZ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016201265.1	1e-161	trihelix transcription factor GT-3b
TrEMBL	A0A444WVB2	1e-140	A0A444WVB2_ARAHY; Uncharacterized protein
STRING	GLYMA01G35370.2	1e-114	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1781	33	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38250.1	2e-34	Trihelix family protein