PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.AF7AD
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB_related
Protein Properties Length: 234aa    MW: 26824.2 Da    PI: 4.5949
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.AF7ADgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.42.9e-074895347
                     SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47
                      WT eE + +   ++    +    +W+++a+++  gRtl q+++r+qk+
      Araip.AF7AD 48 VWTWEENKAFQSIITSCFQDvihnCWEAVAARLS-GRTLAQLQERFQKL 95
                     6***************9999**************.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.00854598IPR001005SANT/Myb domain
SuperFamilySSF466893.81E-648101IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-54997IPR009057Homeodomain-like
CDDcd001671.72E-44996No hitNo description
PROSITE profilePS500906.5514996IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MVTDEFFADM CGYPPPQPQP QTEWDTRNML ELIPDVGGHQ PLQPQPPVWT WEENKAFQSI  60
ITSCFQDVIH NCWEAVAARL SGRTLAQLQE RFQKLINDIN SIHYGYPSKT PLNAAFDNMT  120
IMMEHNPLSI PIINATPPPS LQPYSTNHQH HREEVMPIIE KEAAPTKTGY HWTHMNIEIV  180
PYFKVVNGWR RICLKEEEHF SGLDGNVEGD GELDFIESLD DYAEGTFGKK DVTF
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.AF7AD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020965362.12e-83uncharacterized protein LOC107612318 isoform X1
RefseqXP_020965363.19e-84uncharacterized protein LOC107612318 isoform X2
RefseqXP_025673895.12e-83uncharacterized protein LOC112773073
TrEMBLA0A444Y9V11e-115A0A444Y9V1_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2927422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.13e-07RAD-like 1