PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.AI6ER

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 357aa MW: 42265.4 Da PI: 8.9937

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.AI6ER	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	54.8	3.2e-17	11	97	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 kfY++Y+k +GFs++++++++ ++i+++ vCs+eg+ +++ + + +t+++t +C a++ v+ +k g w ++k++l+H+H+ +p Araip.AI6ER 11 KFYKHYSKLAGFSTKIRNTTRD--GDKIKNQLIVCSREGRWKSKISP---TLKTNPSTGLNCPARIYVHIMKdVGLWTISKVVLNHSHPYCP 97 6**************98776..8889********9998776...999**************999************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.1E-14	11	97	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MIFKTLEEAR KFYKHYSKLA GFSTKIRNTT RDGDKIKNQL IVCSREGRWK SKISPTLKTN 60 PSTGLNCPAR IYVHIMKDVG LWTISKVVLN HSHPYCPDQA EMLKQQRELS ILHCFRFTRP 120 YGFGLVLELY EDRHIWIPVY LDHHFWVEMR NTQRSESMHS FFNKFITRNS SLRQFQAERE 180 FDATDFHTVI PCTTKSVIEE QFQHVYTHEK FREVQAQYRS KLNCIIRSMH STIGFTTYEV 240 IEQVSNSTFN KFVVTYDAVS RDVKCHCLLL ESRSILCCHS LSVPSFERVD NVAPKYILEC 300 WSKNIKRRHT HIKSSQDEPL QETRNKRFDE LVFQSHNICE FAFESKELTG ILHRAFD

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MIFKTLEEAR KFYKHYSKLA GFSTKIRNTT RDGDKIKNQL IVCSREGRWK SKISPTLKTN  60
PSTGLNCPAR IYVHIMKDVG LWTISKVVLN HSHPYCPDQA EMLKQQRELS ILHCFRFTRP  120
YGFGLVLELY EDRHIWIPVY LDHHFWVEMR NTQRSESMHS FFNKFITRNS SLRQFQAERE  180
FDATDFHTVI PCTTKSVIEE QFQHVYTHEK FREVQAQYRS KLNCIIRSMH STIGFTTYEV  240
IEQVSNSTFN KFVVTYDAVS RDVKCHCLLL ESRSILCCHS LSVPSFERVD NVAPKYILEC  300
WSKNIKRRHT HIKSSQDEPL QETRNKRFDE LVFQSHNICE FAFESKELTG ILHRAFD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.AI6ER

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025692433.1	1e-138	protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBL	A0A444ZLV2	0.0	A0A444ZLV2_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	1e-21	far-red elongated hypocotyls 3