PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.AK66U

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 509aa MW: 58355.2 Da PI: 9.0759

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.AK66U	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	53	1.1e-16	51	137	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 kfY++YAk +GFs+r++ ++++ ++i+++ +Cs+e k +++ + +++t+++ +C a++ ++ k g w ++k++l+H+H+++p Araip.AK66U 51 KFYKNYAKAAGFSTRVRCTNRK--GNKIKNQLITCSREEKWKSKISP---TEKTNPTAGLNCPARIYIHTLKdVGAWIISKVVLDHSHPCCP 137 6*************998776..777999*****99998776...8999**********998879*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.7E-14	51	137	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.186	300	336	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.3E-4	302	333	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	8.0E-4	311	338	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 509 aa Download sequence Send to blast
MDHSTSDCQL NPGEVDYEYE SNEVPEPLSV VDDQLVPKVI MTFTTLEDAG KFYKNYAKAA 60 GFSTRVRCTN RKGNKIKNQL ITCSREEKWK SKISPTEKTN PTAGLNCPAR IYIHTLKDVG 120 AWIISKVVLD HSHPCCPSKP EMLKQHRELS MSIRRTIENN EEADLYEDRH IWVPIYLDHH 180 LWAGMRSTQR SESMHSFFNK YITRNSSLIQ FVKQYDNCLG SREQAERELD AADFHTVIPC 240 ATKSFIEAKF QDAYTHQKFR EVQAQFRGKA NCITRLKNSA LGYSVYEVVE QVSSSIFNKF 300 VVTYDSVAAE VKCQCLLFES RGILCRHALS VLSFEQVSQV SPRYILERWS KKVKRRHTHI 360 KSSHDEPLLE PRSKRFDQLV FRSQNICKFA SESEELTAIL HRAYDNVMAE MESLKAKRKG 420 TCSLSHEDAN LESVNELQSP PRIRTRGHPK NRLGSKLDKQ ITNATKKKKT KINLFDTASA 480 VHSNSSQYQG HVMNYQFRVP AAGDNSLGV

Sequence ? help Back to Top

Protein Sequence Length: 509 aa Download sequence Send to blast

MDHSTSDCQL NPGEVDYEYE SNEVPEPLSV VDDQLVPKVI MTFTTLEDAG KFYKNYAKAA  60
GFSTRVRCTN RKGNKIKNQL ITCSREEKWK SKISPTEKTN PTAGLNCPAR IYIHTLKDVG  120
AWIISKVVLD HSHPCCPSKP EMLKQHRELS MSIRRTIENN EEADLYEDRH IWVPIYLDHH  180
LWAGMRSTQR SESMHSFFNK YITRNSSLIQ FVKQYDNCLG SREQAERELD AADFHTVIPC  240
ATKSFIEAKF QDAYTHQKFR EVQAQFRGKA NCITRLKNSA LGYSVYEVVE QVSSSIFNKF  300
VVTYDSVAAE VKCQCLLFES RGILCRHALS VLSFEQVSQV SPRYILERWS KKVKRRHTHI  360
KSSHDEPLLE PRSKRFDQLV FRSQNICKFA SESEELTAIL HRAYDNVMAE MESLKAKRKG  420
TCSLSHEDAN LESVNELQSP PRIRTRGHPK NRLGSKLDKQ ITNATKKKKT KINLFDTASA  480
VHSNSSQYQG HVMNYQFRVP AAGDNSLGV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.AK66U

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ637178	0.0	HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020997233.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A445A1M9	0.0	A0A445A1M9_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	7e-33	far-red elongated hypocotyls 3