PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.AKS4S
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family M-type_MADS
Protein Properties Length: 174aa    MW: 20969.5 Da    PI: 10.1369
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.AKS4SgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.41.4e-161152344
                 --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
       SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                 i n+  r vt+ kR+ g++KK +ELS+LC+++++ i++ s++
  Araip.AKS4S 11 ITNDAARRVTYKKRKRGMMKKISELSTLCGVDACAIVYNSRQ 52
                 89************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.0E-18160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.068161IPR002100Transcription factor, MADS-box
CDDcd002663.08E-17290No hitNo description
PRINTSPR004045.4E-11323IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.88E-22398IPR002100Transcription factor, MADS-box
PfamPF003192.5E-171152IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-112338IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-113859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MARSKVKLAY ITNDAARRVT YKKRKRGMMK KISELSTLCG VDACAIVYNS RQDAHPLDEP  60
EVWPSRMGVE RVIEKFRQMP EIDQNRKRMD HADYLTLRIA KEKEKLKKKR HDNNEKEFQL  120
RMHDFMLRNR LPENLSFFDL NNLAYHTDMK LREIDMRLQM LLEKENKEMM MDFA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1100109KEKEKLKKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.AKS4S
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020963388.11e-126agamous-like MADS-box protein AGL80
RefseqXP_025668630.11e-127agamous-like MADS-box protein AGL80
TrEMBLA0A444YBT61e-125A0A444YBT6_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2961122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.16e-36AGAMOUS-like 80