PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.APB7B

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

HB-other

Protein Properties

Length: 534aa MW: 60158.8 Da PI: 7.4205

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.APB7B	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.2	7.8e-20	19	75	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 + kR+ t++q+ +Le+++++++yp++e++++LA++lgLte+q++ WF+ rR k+k+ Araip.APB7B 19 KNKRRLKTPSQVMALEKFYNEHKYPTEEMKQDLAEELGLTEKQISGWFCHRRLKDKR 75 67999**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.0E-22	2	75	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.13E-18	14	78	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.572	16	76	IPR001356	Homeobox domain
SMART	SM00389	9.3E-21	18	80	IPR001356	Homeobox domain
CDD	cd00086	2.61E-18	19	75	No hit	No description
Pfam	PF00046	2.7E-17	19	75	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 534 aa Download sequence Send to blast
MEESGELQSD ENKASTEKKN KRRLKTPSQV MALEKFYNEH KYPTEEMKQD LAEELGLTEK 60 QISGWFCHRR LKDKRLLKDE AIGNGRQDRS SGVIQDRGSG RQDSCGSSKH GDYRYVDPKE 120 VESHGLYNRD LSVPDMTYGH RNQYAENASE MDDTSSDSGS FLQDRMFPQG QDPYDVDPSR 180 YPTHNGALPP LNPKGGNIGY KPSGYLKVKG EIEHAAITAV KKQLGRHYQE DGPLLGIEFD 240 QLPPGAFEGQ TADPVHEPYT IANPALLTSP EVSTGKRQSN ISTKYVSYAK FSSKDSHEGV 300 EFGSLHDSDF PDKQDKKVRQ SIKQRQPIYG YANHLPGRNS SDLYDDSNGE ASAYTKVRSI 360 VSKHGIEGMR SDSASNHSDH YEENPMVKQT DLMQGYDNIN PKNVKRSEHV KPKPAKSIRH 420 PRMPVDAEER GLQPMRVAKE ELHKGERKVK KYHDSYGARM LPNEITVSVR RVNLSIHVAA 480 KRAKVDLHKQ FNPKQAPIAE IEQRKNPRSA AEMPMPFSFS EDESLGLDSS SSLD

Sequence ? help Back to Top

Protein Sequence Length: 534 aa Download sequence Send to blast

MEESGELQSD ENKASTEKKN KRRLKTPSQV MALEKFYNEH KYPTEEMKQD LAEELGLTEK  60
QISGWFCHRR LKDKRLLKDE AIGNGRQDRS SGVIQDRGSG RQDSCGSSKH GDYRYVDPKE  120
VESHGLYNRD LSVPDMTYGH RNQYAENASE MDDTSSDSGS FLQDRMFPQG QDPYDVDPSR  180
YPTHNGALPP LNPKGGNIGY KPSGYLKVKG EIEHAAITAV KKQLGRHYQE DGPLLGIEFD  240
QLPPGAFEGQ TADPVHEPYT IANPALLTSP EVSTGKRQSN ISTKYVSYAK FSSKDSHEGV  300
EFGSLHDSDF PDKQDKKVRQ SIKQRQPIYG YANHLPGRNS SDLYDDSNGE ASAYTKVRSI  360
VSKHGIEGMR SDSASNHSDH YEENPMVKQT DLMQGYDNIN PKNVKRSEHV KPKPAKSIRH  420
PRMPVDAEER GLQPMRVAKE ELHKGERKVK KYHDSYGARM LPNEITVSVR RVNLSIHVAA  480
KRAKVDLHKQ FNPKQAPIAE IEQRKNPRSA AEMPMPFSFS EDESLGLDSS SSLD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.APB7B

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016166560.1	0.0	uncharacterized protein LOC107609205 isoform X1
Refseq	XP_025666065.1	0.0	uncharacterized protein LOC112764603 isoform X1
TrEMBL	A0A445C405	0.0	A0A445C405_ARAHY; Uncharacterized protein
STRING	GLYMA14G03850.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5792	30	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	1e-80	HB-other family protein