PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.AR8NT
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 278aa    MW: 30875.6 Da    PI: 8.8899
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.AR8NTgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.91.8e-08156196954
                  HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Araip.AR8NT 156 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 196
                  699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.434147196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.2E-14148205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-14151205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.0E-14153202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.5E-6157196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.68E-6170201No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010500Biological Processtransmitting tissue development
GO:0048462Biological Processcarpel formation
GO:0080126Biological Processovary septum development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MDVDIFKTST ASDSMDMMAM MMQQMEKLPP PELSEPPFYT TYPSQTDFHN NNNVVPQVEP  60
NLINPTFIFQ QQHSMAPPPV VTSNNDDIIT SSFPYPPPPP PPSCSDSSNK KNSMAAMREM  120
IFRVAVMQPV HIDPESIKPP KRRNVKISKD PQSVAARHRR ERISERIRIL QRLVPGGTKM  180
DTASMLDEAI HYVKFLKKQV QTLEQAGGGR TCNNNGFTGF SSSSSSINAS NYPAMVKGCH  240
QPYPPMLMGS SASKQLLSSM MMMSLINSVV FCSVVSVL
Functional Description ? help Back to Top
Source Description
UniProtRequired for the female reproductive tract development and fertility. {ECO:0000269|PubMed:17855426}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.AR8NT
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by ARF3/ETT in the abaxial gynoecium. {ECO:0000269|PubMed:17855426}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016200633.10.0transcription factor HEC2
RefseqXP_025652660.10.0transcription factor HEC2
SwissprotQ9SND48e-51HEC2_ARATH; Transcription factor HEC2
TrEMBLA0A444ZA820.0A0A444ZA82_ARAHY; Uncharacterized protein
STRINGXP_006425907.11e-69(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65134141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.13e-43bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Zhu L, et al.
    A Negative Feedback Loop between PHYTOCHROME INTERACTING FACTORs and HECATE Proteins Fine-Tunes Photomorphogenesis in Arabidopsis.
    Plant Cell, 2016. 28(4): p. 855-74
    [PMID:27073231]