PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.AU573

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 256aa MW: 29192.2 Da PI: 9.8126

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.AU573	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	59.6	9.8e-19	85	174	1	89
FAR1 1 kfYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 +fY++YAk+vGF +r+++++ k+ + +++ Cs+eg+re++ k + r + t gCka++ v +++ +++w vtklel+H+H++ Araip.AU573 85 EFYSNYAKKVGFVTRIRNTNFDktrKELKVPINQSIHCSREGYRESRVKV---AMRVKRITIAGCKARMYVMLDRhNDNWLVTKLELKHTHAC 174 6************999887733345556689*********9988...888899999*******999*************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.9E-16	85	175	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MSMDTPIFEE ALSGSAYDVR ENSIFTDVNV LCLSEHDTPH VEQGKESEDA IQKKDDATVP 60 DHTGIPMEKI PYVGLRFDSL QRAQEFYSNY AKKVGFVTRI RNTNFDKTRK ELKVPINQSI 120 HCSREGYRES RVKVAMRVKR ITIAGCKARM YVMLDRHNDN WLVTKLELKH THACSAEQAV 180 HYSPSRVSTK GRPRMKRLGS ELDASIKNSM RRKKKNPPLD VHQALNQDVA SCSARRANES 240 QEHGGFLSLL NSFRPT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.AU573

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020967767.1	1e-118	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_025684793.1	1e-116	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A444X0P6	1e-126	A0A444X0P6_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14126	2	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	4e-15	FAR1 family protein