PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.AV6R9
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 180aa    MW: 20542.8 Da    PI: 6.504
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.AV6R9genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR174.72e-2384171288
         FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 
                  +Y +YAk+vGF vrk    +  ++g+ t+r+f C+k g+ree+  + ++++r+++aetrtgC+akl + +++ +++w+v kl++eHnHe
  Araip.AV6R9  84 CYVSYAKSVGFGVRKGDAARG-KDGNYTRRRFFCNKAGYREEKYYNnSNRKREHKAETRTGCEAKLSIYLDEsSSVWRVRKLVEEHNHE 171
                  7****************9998.7888***************99887577888899***************999***************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.1E-2284171IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MTKTKYIVVS GDRRVISFQQ LLEMDIEGEA TYFESDEGGQ NMNETLENVS CTCACCGSSR  60
YCGVLTIEDI RNHSWMTADA AYECYVSYAK SVGFGVRKGD AARGKDGNYT RRRFFCNKAG  120
YREEKYYNNS NRKREHKAET RTGCEAKLSI YLDESSSVWR VRKLVEEHNH EEDLGLGKGD
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.AV6R9
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016164159.11e-103protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_025640824.11e-103protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_025664409.11e-103protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_025693546.11e-103protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A444YDB35e-95A0A444YDB3_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2955122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.27e-14FAR1 family protein