PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.B082X
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C3H
Protein Properties Length: 131aa    MW: 14682.9 Da    PI: 6.8652
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.B082XgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.32.1e-0627381526
                 -TTTTT-SS-SS CS
      zf-CCCH 15 CkyGdrCkFaHg 26
                 C yG+rCkF+H+
  Araip.B082X 27 CDYGERCKFIHS 38
                 ***********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.9E-42536IPR000571Zinc finger, CCCH-type
SuperFamilySSF509785.13E-736104IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.102.4E-637102IPR015943WD40/YVTN repeat-like-containing domain
PROSITE profilePS502948.5715192IPR017986WD40-repeat-containing domain
PROSITE profilePS500828.5035192IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MPLQRGAMAV VEVIIEQLGR LIKYENCDYG ERCKFIHSWS CGDSFSLLTQ LEGHTKVVSG  60
IALPSGFDKL YTTCINETLR VWGYQSRQCT ADINVGGEVG CMINEGPWIF VGIPNCTRVQ  120
DQPCTLHRCH K
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.B082X
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015941375.14e-51zinc finger CCCH domain-containing protein 48
RefseqXP_025620179.14e-51zinc finger CCCH domain-containing protein 48-like
SwissprotQ9FNZ21e-37C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLA0A445BFX19e-50A0A445BFX1_ARAHY; Uncharacterized protein
STRINGXP_004513686.18e-42(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1463658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.15e-40zinc finger WD40 repeat protein 1