PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.B0EXC
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 440aa    MW: 49382.2 Da    PI: 6.8796
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.B0EXCgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B396.61.6e-30106210199
                  EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE.. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefel 92 
                  f+kv tpsdv+k++rlv+pk++ae++    ++++ ++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+  + +l
  Araip.B0EXC 106 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSSNDKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFHRGlGElYRHRL 203
                  89***************************9555568889************************************************76688888888 PP

                  EEEEE-S CS
           B3  93 vvkvfrk 99 
                  ++ ++r+
  Araip.B0EXC 204 YIDWRRR 210
                  8888886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.5E-4196211IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.97E-30103211IPR015300DNA-binding pseudobarrel domain
CDDcd100171.78E-26104193No hitNo description
PROSITE profilePS5086313.831106211IPR003340B3 DNA binding domain
PfamPF023625.0E-28106210IPR003340B3 DNA binding domain
SMARTSM010192.0E-23106211IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MEEEVKGYSD SREEEEEEEE DEAAEIIPIP NTRQETNSSG NRLQQQQDTA VAPNFSQRKQ  60
LDLMELSLGS GSSKDDRNWQ QGGGGGGMVG SCSSSSSEAV EKEHMFDKVV TPSDVGKLNR  120
LVIPKQHAEK YFPLDSSSND KGLLLNFEDR NGKLWRFRYS YWNSSQSYVM TKGWSRFVKE  180
KKLDAGDIVS FHRGLGELYR HRLYIDWRRR PDHPPPDPSA SLISPFFLPN HYSAAITWGA  240
GGRFYSLPSP TPPPRHHHFH HHQHHPLATN YNTHMYGFHH HPGAATGTSH HLLSGYNDQQ  300
LNSGSPGPLY YLRSPPSMSI VDPNLHQERG TAIAPMIIDS VPVAHHHHQQ QQHQHGVVPN  360
SSNFDSTNTA GKRLRLFGVN MECASSSSSS PAEDHSHVAM SSSLPSSSRF GDQRGDTTTT  420
TPSVLFDLDP SLQYHHHHRH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A4e-621012113114B3 domain-containing transcription factor NGA1
5os9_B4e-621012113114B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.B0EXC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016205813.10.0B3 domain-containing protein Os03g0120900
RefseqXP_025663077.10.0B3 domain-containing protein Os03g0120900
RefseqXP_025663078.10.0B3 domain-containing protein Os03g0120900
RefseqXP_025663079.10.0B3 domain-containing protein Os03g0120900
RefseqXP_025663080.10.0B3 domain-containing protein Os03g0120900
SwissprotO827995e-75NGA1_ARATH; B3 domain-containing transcription factor NGA1
TrEMBLA0A444YLH10.0A0A444YLH1_ARAHY; Uncharacterized protein
STRINGGLYMA07G05381.31e-122(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23383382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.15e-66B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  3. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]
  4. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  5. Sasnauskas G,Manakova E,Lapėnas K,Kauneckaitė K,Siksnys V
    DNA recognition by Arabidopsis transcription factors ABI3 and NGA1.
    FEBS J., 2018. 285(21): p. 4041-4059
    [PMID:30183137]
  6. Sato H, et al.
    Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187
    [PMID:30397148]