PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.B4UFU
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 582aa    MW: 65560.9 Da    PI: 7.039
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.B4UFUgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR155.51.9e-17112199190
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                  +fY +YAk++GF +++++++  k ++  +++   C++ g re++ k+     r+++ +  gCka++ vk +k  + w++ k++l H+H+++
  Araip.B4UFU 112 DFYVTYAKKAGFATKIRTTTFDKITKAPINQAIHCNRDGIRESRVKA---PTRKNTISAAGCKARIYVKFDKaVQDWVLFKVDLTHSHPCS 199
                  6*******************************************999...88899999*************999**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.3E-15112200IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.31368404IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 582 aa     Download sequence    Send to blast
MAESQEEHVS SKGPPLCTSP CQNSLMEVDI VEPLVCVASN VSENLPDEPE YLAGDVAGHD  60
HKSNKATQLS DVTDVESEEK ELGDELPDHG NLQEDEIPRV GMRFSQLQMA HDFYVTYAKK  120
AGFATKIRTT TFDKITKAPI NQAIHCNRDG IRESRVKAPT RKNTISAAGC KARIYVKFDK  180
AVQDWVLFKV DLTHSHPCSP RKAVHYHEYR QLTMHAKCVI EDNDETGIHL YDDRRMWVPI  240
YFKGEFWASM RSTQRSESMH AFYGGYLSSK TSLVQFVHEY DNVLGVKEQR ELEDDAADSR  300
GVIPCATTSP MEKQFQLEYT TSIFRDVQIE FVKKANCRVS AIDEQGPLVC VKVEEEKLVN  360
DTILCVPYDV HFDRSTQELR CECNLFESSG VLCCHCLEVF HSYKVYKVPS CYVLPRWSKK  420
IKRKHTYVKS SHDVSRSDES HVAFRGLCAH FYNVAQEFVG DDEETALLHV ALEETRAKLA  480
AHRAKKRSES VAETQTNIGS QSSNDVSVDD IQGPSKVTTK GRPKSKRLGS ALEKSIKNSR  540
RRKQKNLPPV VRPHTLEDTN HCAVSGLNGP EQAGSKAAVA KT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1538543SRRRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.B4UFU
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020967455.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A445EMZ90.0A0A445EMZ9_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-27FAR1-related sequence 5