PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.B577E
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MIKC_MADS
Protein Properties Length: 205aa    MW: 23365.6 Da    PI: 7.8076
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.B577EgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.91.3e-28959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 k+i+n + rqvtfskRr g++KKAeELSvLCda+va+iifsstgkl++yss
  Araip.B577E  9 KKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFDYSS 59
                 68***********************************************96 PP
2K-box39.23e-14921671999
        K-box  19 qelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                   ++++L ke+ +  +++R+l GedL+ L+++eLqqLe+ Le++l +      e ++++i +lq+k  +l een++Lr+++ 
  Araip.B577E  92 SNYTRLSKEVAEKSHKLRQLRGEDLQGLNIEELQQLERSLETGLGR-----GEKIMSEITDLQRKGMQLVEENERLRRQVV 167
                  57899999999999******************************84.....77899**********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.3E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.417161IPR002100Transcription factor, MADS-box
CDDcd002658.43E-40277No hitNo description
SuperFamilySSF554559.16E-32382IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003199.9E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-273859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129710.59187172IPR002487Transcription factor, K-box
PfamPF014867.1E-1392166IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009266Biological Processresponse to temperature stimulus
GO:0009910Biological Processnegative regulation of flower development
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0030154Biological Processcell differentiation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048438Biological Processfloral whorl development
GO:0005634Cellular Componentnucleus
GO:0000900Molecular Functiontranslation repressor activity, nucleic acid binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MAREKIQIKK IDNATARQVT FSKRRRGLFK KAEELSVLCD ADVALIIFSS TGKLFDYSSS  60
SMKEILERHH LHSKNLAKME QPSLELQLVE NSNYTRLSKE VAEKSHKLRQ LRGEDLQGLN  120
IEELQQLERS LETGLGRGEK IMSEITDLQR KGMQLVEENE RLRRQVVEIT HGKGHHGGGE  180
SEIIVGEEGQ SSESVTNAIV FWLRI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-21169169MEF2C
5f28_B3e-21169169MEF2C
5f28_C3e-21169169MEF2C
5f28_D3e-21169169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00272DAPTransfer from AT2G22540Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.B577E
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025651072.11e-126MADS-box protein JOINTLESS-like
RefseqXP_025651073.11e-126MADS-box protein JOINTLESS-like
RefseqXP_025697729.11e-126MADS-box protein JOINTLESS-like
RefseqXP_025697730.11e-126MADS-box protein JOINTLESS-like
SwissprotQ9FUY61e-101JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLA0A445LJC91e-113A0A445LJC9_GLYSO; MADS-box protein SVP isoform C
STRINGGLYMA02G04710.11e-114(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89033106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.14e-94MIKC_MADS family protein
Publications ? help Back to Top
  1. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]