PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.B5L53

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

MYB_related

Protein Properties

Length: 844aa MW: 92088 Da PI: 4.5374

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.B5L53	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	38.2	3.4e-12	687	730	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+WT+ + el+++av+q+G++ ++ I + ++ Rt+ q+k+++ k Araip.B5L53 687 RGKWTKHDNELFYEAVRQFGTD-FSMIQQLFP-DRTRHQIKLKYKK 730 89******************.*****.*********87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF15963	1.2E-26	680	764	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.9E-8	682	730	IPR009057	Homeodomain-like
PROSITE profile	PS51293	9.51	685	733	IPR017884	SANT domain
SMART	SM00717	2.0E-9	686	734	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	3.96E-11	688	736	IPR009057	Homeodomain-like
CDD	cd00167	2.15E-7	689	730	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 844 aa Download sequence Send to blast
MDPYDDILPT APAGRGRAGA KFAPKVKPKP VPRKEISAEK HEISSKDGEG ERVASSTITS 60 SKDMDTGPQS KCHAAVASTL SVPPQHSAGS NLEDATKSQM ANPQQVGVNV DTAALVDAQP 120 STDASTEVES AREEDPVALE GSRHSNFVPE TNLSNDSTHP VQTADSVEKL SNNVAILSTI 180 CSTGGSMGDP AKNVKEPVLD SNNCLGLGDD LMQVGPDVGF ENASDNDAAI LESNIQSNLI 240 FGREREAESE KFELDPFCEV LPDPGTRTAR KFQPKIKPRP RVGAKPAVAS ASSNDMMARS 300 VELPTFCMNE VQSFQSSDDG ISMLNQPSNS PVPTLEIPMA TDLSSKFDYV DSSIPFSKDN 360 NNLAAVSASQ LDSLDAVFSD VAVHNGTRDL PSSVGKSAAE SADIFAGLES IDDFTTQAAT 420 TTGKPILQSE TEEVVDLSPG CPVDNVSDYQ SKKTDNDPAS EIPVDEELTN SPNSPTLADL 480 MQDANGRKKE DAVWSSLRKR KKSGANEEDK GVKTSRQRRK QATHKPNDEE FEVDDSSKKK 540 ASLNSTKKSV AKNGKTSQKH KKANEDLENG KKEPPKRFSH SSRRKRRCVN QALLEIPEDE 600 LDMHTLSLKD IILLAEHRER LAVWVEGLSQ GRGGGDSQHE AEAGANSEEE YLGSEDDREA 660 GDDEASESVP LASSLFNYQS FMEKTPRGKW TKHDNELFYE AVRQFGTDFS MIQQLFPDRT 720 RHQIKLKYKK EERQHPLRLA DAVNNRSKDH FHFKMLIERL QQASAKEDQD PGKDASGSMA 780 AEEVENSAPG TNEDVGTTEQ EEFATTEQEA NVEDQQDSKS VPSPEQFDNS DDELAIWAQY 840 KSEI

Sequence ? help Back to Top

Protein Sequence Length: 844 aa Download sequence Send to blast

MDPYDDILPT APAGRGRAGA KFAPKVKPKP VPRKEISAEK HEISSKDGEG ERVASSTITS  60
SKDMDTGPQS KCHAAVASTL SVPPQHSAGS NLEDATKSQM ANPQQVGVNV DTAALVDAQP  120
STDASTEVES AREEDPVALE GSRHSNFVPE TNLSNDSTHP VQTADSVEKL SNNVAILSTI  180
CSTGGSMGDP AKNVKEPVLD SNNCLGLGDD LMQVGPDVGF ENASDNDAAI LESNIQSNLI  240
FGREREAESE KFELDPFCEV LPDPGTRTAR KFQPKIKPRP RVGAKPAVAS ASSNDMMARS  300
VELPTFCMNE VQSFQSSDDG ISMLNQPSNS PVPTLEIPMA TDLSSKFDYV DSSIPFSKDN  360
NNLAAVSASQ LDSLDAVFSD VAVHNGTRDL PSSVGKSAAE SADIFAGLES IDDFTTQAAT  420
TTGKPILQSE TEEVVDLSPG CPVDNVSDYQ SKKTDNDPAS EIPVDEELTN SPNSPTLADL  480
MQDANGRKKE DAVWSSLRKR KKSGANEEDK GVKTSRQRRK QATHKPNDEE FEVDDSSKKK  540
ASLNSTKKSV AKNGKTSQKH KKANEDLENG KKEPPKRFSH SSRRKRRCVN QALLEIPEDE  600
LDMHTLSLKD IILLAEHRER LAVWVEGLSQ GRGGGDSQHE AEAGANSEEE YLGSEDDREA  660
GDDEASESVP LASSLFNYQS FMEKTPRGKW TKHDNELFYE AVRQFGTDFS MIQQLFPDRT  720
RHQIKLKYKK EERQHPLRLA DAVNNRSKDH FHFKMLIERL QQASAKEDQD PGKDASGSMA  780
AEEVENSAPG TNEDVGTTEQ EEFATTEQEA NVEDQQDSKS VPSPEQFDNS DDELAIWAQY  840
KSEI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	486	501	RKKEDAVWSSLRKRKK
2	497	501	RKRKK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.B5L53

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004528	2e-46	AP004528.1 Lotus japonicus genomic DNA, chromosome 6, clone: LjT03B03, TM0057b, complete sequence.
GenBank	AP006709	2e-46	AP006709.1 Lotus japonicus genomic DNA, chromosome 2, clone: LjT41D19, TM0592, complete sequence.
GenBank	AP007302	2e-46	AP007302.1 Lotus japonicus genomic DNA, chromosome 2, clone: LjT10F20, TM0796, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025653973.1	0.0	uncharacterized protein LOC112749800 isoform X1
Refseq	XP_025653974.1	0.0	uncharacterized protein LOC112749800 isoform X1
TrEMBL	A0A444Z7Z2	0.0	A0A444Z7Z2_ARAHY; Uncharacterized protein
STRING	GLYMA11G01285.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3666	29	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39160.1	1e-36	MYB_related family protein