PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.B5XPZ
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 209aa    MW: 23867 Da    PI: 10.2619
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.B5XPZgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.21.1e-11137182655
                  HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +++Er RR ri +++  L el+P+     +k  s a++L +Av YIk+Lq
  Araip.B5XPZ 137 SIAERVRRTRISERMKLLEELVPNM----DKQASTADMLDMAVGYIKDLQ 182
                  689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.107131181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-15134197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.90E-9135184No hitNo description
Gene3DG3DSA:4.10.280.101.1E-13136194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.5E-9137182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-9137187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MTKGVGNYSG SDELSLSTMN RFNNQISFSS SRSPSSSATA TNNNNRNGGL FFPNYGSWNE  60
TSYKRDDQNR IHKLIFYANQ NEEFGNNKVV HTLSHQLSFP KAESEMFAME NMIHFPLSDS  120
VPCKIRAKRG CATHPRSIAE RVRRTRISER MKLLEELVPN MDKQASTADM LDMAVGYIKD  180
LQKQFKNLSD KRAKCKCIRM QKSDSSKKF
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.B5XPZ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016207457.11e-157transcription factor bHLH130
RefseqXP_025663378.11e-156transcription factor bHLH130
SwissprotQ66GR38e-50BH130_ARATH; Transcription factor bHLH130
TrEMBLA0A444YHF91e-155A0A444YHF9_ARAHY; Uncharacterized protein
STRINGXP_004497939.17e-66(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2390622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.17e-52bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]